PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025843.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 384aa MW: 42431.5 Da PI: 5.5207

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025843.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36	1.8e-11	55	139	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + +L++ + e+ ++ g+ + ++Weev++ ++e +s qCk+k +nl+kr+k ++ + +++ es+s++p+++++e Cse_sc025843.1_g010.1 55 WSDVAISTLLDSYIEKC-KVTFGNFRLKDWEEVAASVSEMCErAKSVDQCKSKVDNLKKRFKVERFRVGSGDGESESRWPWLRKME 139 99999999999988764.577899999********887542569*********************999*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MTSPHTDFLD GAYTPRATHN DGESPYIYTT TITNNKKPKL ITPNSSSSSF NREEWSDVAI 60 STLLDSYIEK CKVTFGNFRL KDWEEVAASV SEMCERAKSV DQCKSKVDNL KKRFKVERFR 120 VGSGDGESES RWPWLRKMES IVGDFVSVKG VSCDEKFGGG RVKRYTTATS SPSGPITNMD 180 XKPVTNTRWR RVVFKISGDA LAGADSENID PKSAFEKLGV QARVLSAFCM PEVSEPYNRQ 240 RAIRHLEKGR VLIFGGTGAG TGNPLFSTDT AAALRASELN ADAVIKGTNL LDMYEGDSIS 300 SVAYEHISFR EFASRGVSLF DMTAATFCEE NEIPVVIFDL HEPGNISRAL CGEHIGTLIY 360 ETGSTELLPL HLQTMSAEEE VFIT

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MTSPHTDFLD GAYTPRATHN DGESPYIYTT TITNNKKPKL ITPNSSSSSF NREEWSDVAI  60
STLLDSYIEK CKVTFGNFRL KDWEEVAASV SEMCERAKSV DQCKSKVDNL KKRFKVERFR  120
VGSGDGESES RWPWLRKMES IVGDFVSVKG VSCDEKFGGG RVKRYTTATS SPSGPITNMD  180
XKPVTNTRWR RVVFKISGDA LAGADSENID PKSAFEKLGV QARVLSAFCM PEVSEPYNRQ  240
RAIRHLEKGR VLIFGGTGAG TGNPLFSTDT AAALRASELN ADAVIKGTNL LDMYEGDSIS  300
SVAYEHISFR EFASRGVSLF DMTAATFCEE NEIPVVIFDL HEPGNISRAL CGEHIGTLIY  360
ETGSTELLPL HLQTMSAEEE VFIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	7e-56	Trihelix family protein