PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025747.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 406aa MW: 45343.8 Da PI: 7.7595

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025747.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	250	297	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cse_sc025747.1_g020.1 250 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 297 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDRDFFPFEN SSQMPSWKVM SQVPEINDRF NSFESNMTSM TSSPVSNSPS NSPKVNWPIM 60 DHFVKENTPN MRNTIPVAPG LPSLVSDPGF AERAAKFSCF GSRSFNGRTS QLGLSSVDPN 120 SQFRSNVSTL IGNSKLPRVS SSPLLKINRS GHDQKSTNSN EEQESSVSEH IEIGLKNDSS 180 SRKRKVASLK GKAKDIASPG VKEEENDEMN TKKPKKTEEG TNGETEKSKV PEPPKDYIHV 240 RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQHQV 300 EFLSMKLATV NPRQDLDMNG HISKDMNRLY PIEPSTSDFY QQNPQQLLFI GSTPMTQSPT 360 DPLPTVHGFS ETFAQFAGFE GDDLHSIVKM GFGDSRNRSP EMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDRDFFPFEN SSQMPSWKVM SQVPEINDRF NSFESNMTSM TSSPVSNSPS NSPKVNWPIM  60
DHFVKENTPN MRNTIPVAPG LPSLVSDPGF AERAAKFSCF GSRSFNGRTS QLGLSSVDPN  120
SQFRSNVSTL IGNSKLPRVS SSPLLKINRS GHDQKSTNSN EEQESSVSEH IEIGLKNDSS  180
SRKRKVASLK GKAKDIASPG VKEEENDEMN TKKPKKTEEG TNGETEKSKV PEPPKDYIHV  240
RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQHQV  300
EFLSMKLATV NPRQDLDMNG HISKDMNRLY PIEPSTSDFY QQNPQQLLFI GSTPMTQSPT  360
DPLPTVHGFS ETFAQFAGFE GDDLHSIVKM GFGDSRNRSP EMKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	216	RKRKVASLKGKAKDIASPGVKEEENDEMNTKKPKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-78	bHLH family protein