PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc025678.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YA
Protein Properties Length: 338aa    MW: 37913.1 Da    PI: 8.4231
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc025678.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.7e-32171227158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR RgsgGrF
  Cse_sc025678.1_g030.1 171 QEPVYVNAKQYNAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRGSGGRF 227
                            69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MDCEKIRKEK RDELATLAFR SDSLLRLNFL RPNLLTLLKQ QFERSVFSMA IQANSSGSSS  60
AEQSLDRESE SDEVVSEEED EVSKDTQAAD SYGKQQKDIQ QGVPNMLASN GETLGQASQH  120
ELVGHSIVCA PNPYCDPYYG GMMTAYGQPM VHPQFLEMHQ ARMPLPLEMA QEPVYVNAKQ  180
YNAILRRRQS RAKAELEKKL IKDRKPYLHE SRHQHAMRRV RGSGGRFAKK TEVNSGNRAD  240
EDKNTTASSV SVNQTGVKRV RSESAESLDP RKETPRGNLV NSLSTRAYLD EGRYDNGDNY  300
QGSGYRLHSS DRGDGGSLGQ QWITMSSNQT SQRAVAMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.26e-58NF-YA family protein