PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc025537.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C3H | ||||||||
Protein Properties | Length: 204aa MW: 22370 Da PI: 6.0029 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9.1e-06 | 44 | 59 | 11 | 26 |
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 r+GtC G+rC++ H+ Cse_sc025537.1_g010.1 44 RMGTCVNGSRCRYDHV 59 78*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MSPNRQGVSP PTTGDAGDIQ EDQGLNDIEL TYIGVPDSTV EAPRMGTCVN GSRCRYDHVK 60 VAQPKVKAYA SSSTYPYQFG VSETVSQTTD PCVIGELSAS SRPYVTSAQS VWGEVTGENE 120 LLNDVVQARS TNPADILMCS FAVAGNCPRG ENCPHVHGDL CPTCRKVYLH PFRPAEREEH 180 KTMCEKNINK LWNFPKTSGY YCKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 9e-24 | C3H family protein |