PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025397.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 405aa MW: 45612.6 Da PI: 8.0062

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025397.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.8e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+d+++ +G+g +W + ++++g +R++k+c++rw++yl Cse_sc025397.1_g030.1 14 KGPWAPEEDAKLKDYIESYGTGgNWIALPQKIGINRCGKSCRLRWLNYL 62 79*****************************99**********97 PP
2	Myb_DNA-binding	36.9	8.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Cse_sc025397.1_g030.1 69 GGFSQEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MGRAPCCDKT VVKKGPWAPE EDAKLKDYIE SYGTGGNWIA LPQKIGINRC GKSCRLRWLN 60 YLRPNIKHGG FSQEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFRR 120 HKQSFANRSD DLKDVNAMET LSNSAIERLQ LHMQLQNQAN PNISNGANLT MWPCQLNPIQ 180 ERIIQNLQYL NESSNSLMAH HFSPNVPKNV DPYSPPDNTS LQQEYPPFSS VLVNGGMENA 240 IYESTSTGLS TPVSEPGDTE QSRIELHQFW ALQAEIDEFL SNNANFLSQD QAQVKEVDYF 300 GNMDDAKNNM VFWSNEFDSS TFLLKARSQL LEVKQAQVHE LPCFVIIKTT EKCCVQGISE 360 GCRKSQEESI SERCLASVSK ALVKNAKGVK TKALVKGAKR SCQGH

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MGRAPCCDKT VVKKGPWAPE EDAKLKDYIE SYGTGGNWIA LPQKIGINRC GKSCRLRWLN  60
YLRPNIKHGG FSQEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFRR  120
HKQSFANRSD DLKDVNAMET LSNSAIERLQ LHMQLQNQAN PNISNGANLT MWPCQLNPIQ  180
ERIIQNLQYL NESSNSLMAH HFSPNVPKNV DPYSPPDNTS LQQEYPPFSS VLVNGGMENA  240
IYESTSTGLS TPVSEPGDTE QSRIELHQFW ALQAEIDEFL SNNANFLSQD QAQVKEVDYF  300
GNMDDAKNNM VFWSNEFDSS TFLLKARSQL LEVKQAQVHE LPCFVIIKTT EKCCVQGISE  360
GCRKSQEESI SERCLASVSK ALVKNAKGVK TKALVKGAKR SCQGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-93	MYB family protein