PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025284.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 734aa MW: 84902.5 Da PI: 8.6602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025284.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.1	3.7e-10	96	149	47	90
FAR1 47 k..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++ +rr+ra++r+gCka l+++++ ++k++v+++ ++HnH+l+ Cse_sc025284.1_g010.1 96 DtpssdiaevvKVIKRRKRASQRCGCKALLRLRQTPENKFVVYTFFEKHNHSLV 149 1455556666667899************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MSNSLEDDSM QGEPSTPRST NTVQDNVVDD AESVTQVGSY QPTPPGSKFW IPEAKNKPLE 60 GTQFDTIEQA LKFYKEEGVK PSPKDDISKK DKSKMDTPSS DIAEVVKVIK RRKRASQRCG 120 CKALLRLRQT PENKFVVYTF FEKHNHSLVH ENDYKYLRAA RKLTFSKQHL LRRLSNANIG 180 PTRAWKVMIE MYGGFENIGV TDVECRNYRR GLDNFIGNRD AQMVVEKLLS RQEFFSDFSV 240 EYKQHKKEKT LIGLFWADSQ AKLNYAAFGD VVSFDATFRS NRYNMVLVPF TGIDNHNRCI 300 LFGAALLASE ATKRYTWLLK RFKKIFGSAP KVVVTDQDPS MKIAIEKIFL DSRHRLCMWH 360 IMQKLSGKVG PALCSNTDFK RRLCDIFWTD KIDCDVFETE WVSIMNDFNL NDNKWLNDMF 420 AMRTKWIPAY FRHEPMSGLM RTTSSHYDTA IDSQRFINGK NTHDSNYKTP DFKTHLHIER 480 EAAEFYTHTI FYDESDSCST FVIRDTEADY RINASFVEAK YEVRYVPDQC SAQCTCLRYE 540 CCGLLCRHIF YVLRMSKVFH FPKQYMDNRW SKQAISHKCV ESRNAYTATT NSDSVVDATL 600 RDIYSNVEES INHLVGDIQK LHIYRDDQLA LMEKAKIDVP NPPKLNTNEA YARALGVTEP 660 AELTILTPTD INNKGQVIRT RRKSKVEIAT ELADKPKRRC KSCGKMARHD SRNCPKKKKG 720 LQDEDVDQFM DDSE

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MSNSLEDDSM QGEPSTPRST NTVQDNVVDD AESVTQVGSY QPTPPGSKFW IPEAKNKPLE  60
GTQFDTIEQA LKFYKEEGVK PSPKDDISKK DKSKMDTPSS DIAEVVKVIK RRKRASQRCG  120
CKALLRLRQT PENKFVVYTF FEKHNHSLVH ENDYKYLRAA RKLTFSKQHL LRRLSNANIG  180
PTRAWKVMIE MYGGFENIGV TDVECRNYRR GLDNFIGNRD AQMVVEKLLS RQEFFSDFSV  240
EYKQHKKEKT LIGLFWADSQ AKLNYAAFGD VVSFDATFRS NRYNMVLVPF TGIDNHNRCI  300
LFGAALLASE ATKRYTWLLK RFKKIFGSAP KVVVTDQDPS MKIAIEKIFL DSRHRLCMWH  360
IMQKLSGKVG PALCSNTDFK RRLCDIFWTD KIDCDVFETE WVSIMNDFNL NDNKWLNDMF  420
AMRTKWIPAY FRHEPMSGLM RTTSSHYDTA IDSQRFINGK NTHDSNYKTP DFKTHLHIER  480
EAAEFYTHTI FYDESDSCST FVIRDTEADY RINASFVEAK YEVRYVPDQC SAQCTCLRYE  540
CCGLLCRHIF YVLRMSKVFH FPKQYMDNRW SKQAISHKCV ESRNAYTATT NSDSVVDATL  600
RDIYSNVEES INHLVGDIQK LHIYRDDQLA LMEKAKIDVP NPPKLNTNEA YARALGVTEP  660
AELTILTPTD INNKGQVIRT RRKSKVEIAT ELADKPKRRC KSCGKMARHD SRNCPKKKKG  720
LQDEDVDQFM DDSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	697	719	KRRCKSCGKMARHDSRNCPKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-73	FAR1 family protein