PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025118.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 541aa MW: 61461.5 Da PI: 9.8938

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025118.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6e-19	252	357	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek 72 Y++YA+e GF+vrk+ ++++k+n +e ++ f C ++g++ ++k+ ++++rr+ a+ r+gC+ +l++kk+ Cse_sc025118.1_g020.1 252 AYKDYAREGGFEVRKDGQRNTKDNkEEPNNKYFHCVRQGFKPPHKSGnqktdkpqttnplgvnKVTKRRKCASCRCGCTTQLRLKKRA 339 5************999888655156788999****999888899********99999***************** PP FAR1 73 dgkwevtkleleHnHela 90 dgk++v+k+ ++HnH+l+ Cse_sc025118.1_g020.1 340 DGKYVVSKFLEKHNHSLV 357 *************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MTNHPLTFVV STHIVFENCL ALNSSGGDLC NRQAYDRIHA MTVRLSKLRA LELKRRGNGN 60 ISKDLSQYAI LKKLRRNSSL TLRRNYCVTQ YANLSEGYGV TPLKAYDVTT LGQKRFHAAD 120 TYAVTIASIM TSLVATLGSV VLNGGRGQLP RRYDQLTLGE RTEMGRGTRN NRTYDGAPDF 180 SCGGIFADSE PVTPRAVNND QDTFGDSNFT PPHHQVGSFQ PTPKCTKYWV PRVDKKPFEG 240 QVFDNLELAQ KAYKDYAREG GFEVRKDGQR NTKDNKEEPN NKYFHCVRQG FKPPHKSGNQ 300 KTDKPQTTNP LGVNKVTKRR KCASCRCGCT TQLRLKKRAD GKYVVSKFLE KHNHSLVYED 360 DIKYLRASRH LTFSKQQLLN QLSNVNIGPV RSRKVMKEVY GGFENISATD VDCKNYGHGL 420 NEFIGNRDAQ MVVDKLLSRA KYFEDYSVEY KQDKKSKELV GLFWADEQAK HNYDAFGDVV 480 SFDATFRSNR WGQSREDSIW SVRPNLSAKS HHWRDVRCPL ISPVVPGPLS QVINFCYMLD 540 L

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MTNHPLTFVV STHIVFENCL ALNSSGGDLC NRQAYDRIHA MTVRLSKLRA LELKRRGNGN  60
ISKDLSQYAI LKKLRRNSSL TLRRNYCVTQ YANLSEGYGV TPLKAYDVTT LGQKRFHAAD  120
TYAVTIASIM TSLVATLGSV VLNGGRGQLP RRYDQLTLGE RTEMGRGTRN NRTYDGAPDF  180
SCGGIFADSE PVTPRAVNND QDTFGDSNFT PPHHQVGSFQ PTPKCTKYWV PRVDKKPFEG  240
QVFDNLELAQ KAYKDYAREG GFEVRKDGQR NTKDNKEEPN NKYFHCVRQG FKPPHKSGNQ  300
KTDKPQTTNP LGVNKVTKRR KCASCRCGCT TQLRLKKRAD GKYVVSKFLE KHNHSLVYED  360
DIKYLRASRH LTFSKQQLLN QLSNVNIGPV RSRKVMKEVY GGFENISATD VDCKNYGHGL  420
NEFIGNRDAQ MVVDKLLSRA KYFEDYSVEY KQDKKSKELV GLFWADEQAK HNYDAFGDVV  480
SFDATFRSNR WGQSREDSIW SVRPNLSAKS HHWRDVRCPL ISPVVPGPLS QVINFCYMLD  540
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-29	FAR1 family protein