PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc025035.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 269aa    MW: 30496.8 Da    PI: 10.0351
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc025035.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.63.3e-521432368101
                  NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                            ++ie++tdfknh+lPlarikki+kadedv+misaeaPv+++ ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Cse_sc025035.1_g020.1 143 EEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFASACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 230
                            579************************************************************************************* PP

                  NF-YC  96 vprdel 101
                            vpr++l
  Cse_sc025035.1_g020.1 231 VPRKDL 236
                            ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MVTSKNRRKL VCINFYGLLV VVPHVASSIC CFHGLVHEQM ASKKVLVEPK NALGKQNNKL  60
FQMPAAKPGY GGADEARMLQ RQLSVTSMKI GVGANRAATA ISFLHKHGFI YPLDITCFKQ  120
PVTDKRVSNK IGVIILEDGM QYEEIEQTTD FKNHSLPLAR IKKIMKADED VRMISAEAPV  180
IFASACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRKDLKDEI  240
IASTTRTTGR CLNRYRLKQQ IPMLYPKVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206212RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.32e-66NF-YC family protein