PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc024350.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 626aa MW: 71346.7 Da PI: 6.4374

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc024350.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	93	114	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +f++ G+C+ G+ C+F Hgp Cse_sc024350.1_g040.1 93 ACYYFQK-GFCSKGPLCPFLHGP 114 6999999.*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MVGGEEDEFL KRNTDCVYFL ASPLTCKKGS ECEYRHSEIA RLNPRDCYYW LSGNCLNPKC 60 AFRHPPLDGL LGAEVPAFVG PPVPPASGKP GVACYYFQKG FCSKGPLCPF LHGPPSIAAQ 120 PTPPNSVTKP SKVPSTGPEK PAQEQKFTQH ESIQKPVAFH PSHGKYVPGV QAHAPARNGG 180 NVAMEKKVEP PPQETSRYTP ANVAPPPVIN GVPISRSNHG VYEANHTSDN EGTNGKDVDE 240 YSREPTPGFD VLVDTEAGES KYYPNEEQFG RSRGNYDVER EMYPEQRDYD HYNDEGRLWE 300 EHRESSSFGR KRYPRDESPD QFEQSDLRHR LSKQRRGIDN VGALRSVVSR EHPRDSYNDR 360 MPRRDIHHNQ HGHHNHHHDR HNHHHHDRHM EPGSFSSRLR GRINITGNET GSRVEREVDM 420 GRHHRSRYSP GRPPYTLSNH SRLRDRIKGS RTSNDFDNDR RNHRGSRGSD IDSEFSGPRR 480 LSELRTQQTD NSQLLGKRKY PRAESQQSEV NASFEGPKPL SEILKRKRGP IISSVVNNEN 540 NNSNENNDHN QEERKESPSE NMVHAENTKS TNDAMVDQEL EAYDPKDGDY DYEQIDGEEY 600 YEEGDEEYIE EEEGDETGKK DNVVYV

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MVGGEEDEFL KRNTDCVYFL ASPLTCKKGS ECEYRHSEIA RLNPRDCYYW LSGNCLNPKC  60
AFRHPPLDGL LGAEVPAFVG PPVPPASGKP GVACYYFQKG FCSKGPLCPF LHGPPSIAAQ  120
PTPPNSVTKP SKVPSTGPEK PAQEQKFTQH ESIQKPVAFH PSHGKYVPGV QAHAPARNGG  180
NVAMEKKVEP PPQETSRYTP ANVAPPPVIN GVPISRSNHG VYEANHTSDN EGTNGKDVDE  240
YSREPTPGFD VLVDTEAGES KYYPNEEQFG RSRGNYDVER EMYPEQRDYD HYNDEGRLWE  300
EHRESSSFGR KRYPRDESPD QFEQSDLRHR LSKQRRGIDN VGALRSVVSR EHPRDSYNDR  360
MPRRDIHHNQ HGHHNHHHDR HNHHHHDRHM EPGSFSSRLR GRINITGNET GSRVEREVDM  420
GRHHRSRYSP GRPPYTLSNH SRLRDRIKGS RTSNDFDNDR RNHRGSRGSD IDSEFSGPRR  480
LSELRTQQTD NSQLLGKRKY PRAESQQSEV NASFEGPKPL SEILKRKRGP IISSVVNNEN  540
NNSNENNDHN QEERKESPSE NMVHAENTKS TNDAMVDQEL EAYDPKDGDY DYEQIDGEEY  600
YEEGDEEYIE EEEGDETGKK DNVVYV