PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc024307.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 547aa MW: 61373.9 Da PI: 7.5482

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc024307.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	133	179	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+++vkq+G + W+ Ia+ m gR +kqc++rw+++l Cse_sc024307.1_g020.1 133 KGQWTDEEDKKLLRLVKQHGERKWAHIAEQMI-GRAGKQCRERWHNHL 179 799***************************.***********97 PP
2	Myb_DNA-binding	52.4	1.2e-16	185	227	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++E+ +lv+++++ G++ W+ Ia+ ++ gRt++++k++w+ Cse_sc024307.1_g020.1 185 KDTWSEDEERILVEVHRKVGNK-WAEIAKLIP-GRTENSIKNHWN 227 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MEGGNHGGGY PNYGNSRKHP LVVPPPMTAI GRFLQGQSSQ SHSSHHNFEK NKEQFIPSNG 60 VYGFSSSSNE GIGGMYNNQY EVSSLPCLPM DKMFAADHGV YSRSYRNMHV NNEVAKSSTK 120 MKLKGGSRKN LIKGQWTDEE DKKLLRLVKQ HGERKWAHIA EQMIGRAGKQ CRERWHNHLR 180 PDIKKDTWSE DEERILVEVH RKVGNKWAEI AKLIPGRTEN SIKNHWNATK RRQNSRRKSK 240 QNEGKNRKLR SSVLQEYIIS TATSNARDDY NIASKTSTTT STIPAVNATP GSSPTRSSEN 300 TSMNFSIVFP ELPNSNSDHS PSLDITQSYD DELTFMQAFF VDSNYPVRQD SNNSSNESSI 360 HVNDPKCPLD NNLLGFSGNL QYLFASSSSI FNESVHIKDS KSSFDMNPLM FSGNWQYGCA 420 SSSPISNESL FHIKDPKFSP DMHPLGFSGN SQYGIASIPH DDEDSHSYLK QENLWKPQLG 480 PDVYMSYLLE GATTLSNSCD YGYYEDTKRD MMFDGEQSVS PGSGSGPASN GKKEMDLVEM 540 VFSSQFP

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MEGGNHGGGY PNYGNSRKHP LVVPPPMTAI GRFLQGQSSQ SHSSHHNFEK NKEQFIPSNG  60
VYGFSSSSNE GIGGMYNNQY EVSSLPCLPM DKMFAADHGV YSRSYRNMHV NNEVAKSSTK  120
MKLKGGSRKN LIKGQWTDEE DKKLLRLVKQ HGERKWAHIA EQMIGRAGKQ CRERWHNHLR  180
PDIKKDTWSE DEERILVEVH RKVGNKWAEI AKLIPGRTEN SIKNHWNATK RRQNSRRKSK  240
QNEGKNRKLR SSVLQEYIIS TATSNARDDY NIASKTSTTT STIPAVNATP GSSPTRSSEN  300
TSMNFSIVFP ELPNSNSDHS PSLDITQSYD DELTFMQAFF VDSNYPVRQD SNNSSNESSI  360
HVNDPKCPLD NNLLGFSGNL QYLFASSSSI FNESVHIKDS KSSFDMNPLM FSGNWQYGCA  420
SSSPISNESL FHIKDPKFSP DMHPLGFSGN SQYGIASIPH DDEDSHSYLK QENLWKPQLG  480
PDVYMSYLLE GATTLSNSCD YGYYEDTKRD MMFDGEQSVS PGSGSGPASN GKKEMDLVEM  540
VFSSQFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	3e-59	MYB family protein