PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc024163.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 1084aa    MW: 121061 Da    PI: 6.7191
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc024163.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22131232199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F
  Cse_sc024163.1_g030.1 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLF 217
                            99*****************************9445444.38*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++++l+++++r+
  Cse_sc024163.1_g030.1 218 I--RDEKQQLLLGIRRA 232
                            *..5688889****997 PP
2Auxin_resp115.83.9e-38257340183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g++dld vrW+nS+Wr+L+
  Cse_sc024163.1_g030.1 257 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGINDLDGVRWKNSQWRNLQ 340
                            79******************************998669********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1084 aa     Download sequence    
MKNSNGSTTN PNEGGDKNNN QRIINPELWQ ACAGPLVNLP PAGTHVVYFP QGHSEQVAAS  60
MKKDVDAQIP NYPNLQSKLL CILHSVTLHA DTETDEVYAQ MTLQPVPSFD REALLRSDLL  120
MKAHKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVARDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPANLS  240
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPLAKYYKA VCSNQISLGM  300
RFRMMFETEE SGTRRYMGTI TGINDLDGVR WKNSQWRNLQ VGWDEATAGE RRNRVSIWEI  360
EPVTAPFFIC PTPPFYQSKR PRQAMLGDES ADLDNLYKRT MPWIGEDMSM KDPGMSLVQW  420
MNMQQNPTLA NQIQPGYLNP LAGSILQNYG GPQMVPQNNL QFSGQRSASP LDQLQKLPQP  480
TTTNPLAMMM QPQQLTDLTQ QAVRQNLTGQ TLHQNQFQSQ IQSQNILQQQ YQQQQLQQQQ  540
QQIQQQQQQH LPQQQQQQHQ LQPQQQQHQP QQQQQVQQMM SVSQSQQKVP LPSQFTDQQI  600
SQKLQMPENQ IQLLQKLHQQ QQSLLAQQGQ LPQDQQKPLL DVSQSFTRSI PTSQIMEMPS  660
QQPVASLSQQ MPRNNNEANF RFSHLSQQPK LQNNQQELSG PAPMPTNQLS TNGSSLLTGT  720
GSDDGPSCST SPSTNNCPNT VPSMTNGRSS QGTTQASAHL MNTSGLETLS ANGNFANELQ  780
QKTEVKPSVN VSKIQNQGFL TPQTYMHNLA GTQMDYLDSS SSATSVCLSQ NDANLQHQNS  840
NHMSFNSQQL PFRDTIQDGE VQDVHRTDIP FGVNMDNRLG MSSMIPDPLI TKGMMGSDKG  900
FQNNLSSGGG MISSYENPAK DTQPELSSSM VSQSFGVPDM TFNSIDSTIN DGSLLNSGVW  960
APPQQQFQRL RTYTKVYKRG AVGRSIDVTA YSGYDELKHD LARRFGIEGQ LEDRLRIGWK  1020
LVYVDHENDV LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGGNSV LPNQACSSSG  1080
GGKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein