PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc024009.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 445aa MW: 51425.1 Da PI: 6.8211

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc024009.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.9	6.4e-24	134	231	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 +W++ +v++Li+a+++++e+ + + +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++ Cse_sc024009.1_g010.1 134 KWSDPMVRLLITAVSYIGEDASMEHgggarrkyanlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVV 221 7************888887754334555677888******************************************669* PP trihelix 77 stcpyfdqle 86 ++ +++d ++ Cse_sc024009.1_g010.1 222 ENPSLLDLMD 231 ***9999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEGNLSSGNM ISGSGGTFDL QGNMRLHHQQ LNSNISNSPF SMHQPHHHNP NAQSARQQGS 60 MVHASIHESF PLRMGVMQDC TRHNQTVALS DLGKGDRGKN SVSDEDEPSF TEEGHDNQNN 120 ENRGKNMSTW HRVKWSDPMV RLLITAVSYI GEDASMEHGG GARRKYANLQ KKGKWKSVSK 180 VMAERGHFVS PQQCEDKFND LNKRYKRLNE ILGRGTSCEV VENPSLLDLM DHVSDKAKDE 240 VRKILSSKHL YYEEMCSYHN GNRLHLPPDP ELQRSLRLAL RARDDHDNDG RRGSHDDLDD 300 DDHDPYMDDH DEYEDHHHHH HTQHHGLNLD QRGVFGVGDG SSKRLKQNEG SQAKNVQADM 360 NQEGVKANHL QDQWMKHRLI QLDEQKIQIQ AQMLELEKER LKWKRYCRKK DTELEMMRME 420 NERMKLENDQ MALELKRKEM STDLS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEGNLSSGNM ISGSGGTFDL QGNMRLHHQQ LNSNISNSPF SMHQPHHHNP NAQSARQQGS  60
MVHASIHESF PLRMGVMQDC TRHNQTVALS DLGKGDRGKN SVSDEDEPSF TEEGHDNQNN  120
ENRGKNMSTW HRVKWSDPMV RLLITAVSYI GEDASMEHGG GARRKYANLQ KKGKWKSVSK  180
VMAERGHFVS PQQCEDKFND LNKRYKRLNE ILGRGTSCEV VENPSLLDLM DHVSDKAKDE  240
VRKILSSKHL YYEEMCSYHN GNRLHLPPDP ELQRSLRLAL RARDDHDNDG RRGSHDDLDD  300
DDHDPYMDDH DEYEDHHHHH HTQHHGLNLD QRGVFGVGDG SSKRLKQNEG SQAKNVQADM  360
NQEGVKANHL QDQWMKHRLI QLDEQKIQIQ AQMLELEKER LKWKRYCRKK DTELEMMRME  420
NERMKLENDQ MALELKRKEM STDLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	410	KERLKWKRYCRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-102	Trihelix family protein