PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023373.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 437aa MW: 47736.7 Da PI: 7.7035

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023373.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	114	135	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ G C++Gd+CkF H+ Cse_sc023373.1_g020.1 114 RVCKYWVT-GSCSFGDQCKFLHS 135 679999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDYDRGKRVF NRLGPSSDNR NYNNNNNNQK VCFHWRAGKC TRANCTYLHH EVAGNGTGAS 60 KRPYNNGFAT EDHRVSNVRR GGSSYVNGAN TWGRGGGRGG NNAVSNRVVV KNDRVCKYWV 120 TGSCSFGDQC KFLHSWCTGS CFAMLTQLEG HQKVVSGIAL PVGSDKLYTG SKDETVRVWD 180 CQSGQCAGVI NLGGEVGCML SEGPWMFVGL PNLVKAWNVQ TSAELSLNGP VGQVYSLAVG 240 NELLFAGVQD GNILAWKYNT VTNCFEPVTA LQGHSAAVVT LVVGANRLYS GSMDNSIRVW 300 NLENLQCLQT LTDHTSVVMS VLCWDQFLLS CSLDKTIKVW AATDSGNLEV TYTHSEEHGL 360 LTLCGMHDLE SKPVLLCACN DNTVRAYDLP SFIERGKIFA KQEIRSIQGG PNLFFTGDGT 420 GEVRVWKWLA DQSATPA

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDYDRGKRVF NRLGPSSDNR NYNNNNNNQK VCFHWRAGKC TRANCTYLHH EVAGNGTGAS  60
KRPYNNGFAT EDHRVSNVRR GGSSYVNGAN TWGRGGGRGG NNAVSNRVVV KNDRVCKYWV  120
TGSCSFGDQC KFLHSWCTGS CFAMLTQLEG HQKVVSGIAL PVGSDKLYTG SKDETVRVWD  180
CQSGQCAGVI NLGGEVGCML SEGPWMFVGL PNLVKAWNVQ TSAELSLNGP VGQVYSLAVG  240
NELLFAGVQD GNILAWKYNT VTNCFEPVTA LQGHSAAVVT LVVGANRLYS GSMDNSIRVW  300
NLENLQCLQT LTDHTSVVMS VLCWDQFLLS CSLDKTIKVW AATDSGNLEV TYTHSEEHGL  360
LTLCGMHDLE SKPVLLCACN DNTVRAYDLP SFIERGKIFA KQEIRSIQGG PNLFFTGDGT  420
GEVRVWKWLA DQSATPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51980.1	0.0	C3H family protein