PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023356.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 342aa MW: 39037.9 Da PI: 8.2035

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023356.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.5e-16	94	200	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA ++ Fs+rks+sk++ +ge+t++ vC++ gk++++ k + +++r+++ t t+Cka+++ k Cse_sc023356.1_g010.1 94 DMYLEYALKARFSIRKSTSKRK--KGEVTHKYIVCNRVGKPRKTIVKdtlaqgsqtvdnqkdggnKPRHKRNSNDTVTDCKACVRFKA 179 58*************99988..999***********9988889**********98888999999********** PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++ ++HnH+l Cse_sc023356.1_g010.1 180 IHgTSSFKLYESFENHNHPLL 200 9****************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDSTTGNYDQ EDTNFPVVSP MQTEANISIQ SPINDEQVNS NEDVPTEYSD LDDSETDDEC 60 IPTPKGHKYW IPEVPADEKP SEGNVFDTFD EAYDMYLEYA LKARFSIRKS TSKRKKGEVT 120 HKYIVCNRVG KPRKTIVKDT LAQGSQTVDN QKDGGNKPRH KRNSNDTVTD CKACVRFKAI 180 HGTSSFKLYE SFENHNHPLL DENNTDLLKA RRKLKFSDKL FIHRASLSNL GPTKAHRLRV 240 EFMGGYQKVR GKPSDWKNFR RSVNKYIGPR DAQMYRMIFV PFTGIDHNKK CVTFGAALIS 300 DETIDSYKWI LTAFKQAHVK EPILAVTDQD PTLRNAVEAV FP

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDSTTGNYDQ EDTNFPVVSP MQTEANISIQ SPINDEQVNS NEDVPTEYSD LDDSETDDEC  60
IPTPKGHKYW IPEVPADEKP SEGNVFDTFD EAYDMYLEYA LKARFSIRKS TSKRKKGEVT  120
HKYIVCNRVG KPRKTIVKDT LAQGSQTVDN QKDGGNKPRH KRNSNDTVTD CKACVRFKAI  180
HGTSSFKLYE SFENHNHPLL DENNTDLLKA RRKLKFSDKL FIHRASLSNL GPTKAHRLRV  240
EFMGGYQKVR GKPSDWKNFR RSVNKYIGPR DAQMYRMIFV PFTGIDHNKK CVTFGAALIS  300
DETIDSYKWI LTAFKQAHVK EPILAVTDQD PTLRNAVEAV FP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	138	KRKKGEVTHKYIVCNRVGKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	4e-14	FAR1 family protein