PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc022343.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 705aa MW: 81490.6 Da PI: 9.3729

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc022343.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.9	8.9e-10	125	183	1	60
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 k+Y++YA+++GFsvr s++++ ++g + ++ +vC+keg ++ +k+t +e++++++ rt Cse_sc022343.1_g020.1 125 KMYENYAEKAGFSVRLSTQNTL-KSGIVERKYLVCNKEGLPKGVNKDTMSEETSETHIRT 183 68*************99998.7888*************999996666666655555 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MPPPLTRSMT PSFNQRNQRN VIESESESDG DEITDITGTS PENSEISILV PAIRYIVPAD 60 RYVVVFAADV GFLLLSGIHY IKQDDLDICE EVEVEGGDFH YKPIVDESLK PKIGREYATI 120 EECIKMYENY AEKAGFSVRL STQNTLKSGI VERKYLVCNK EGLPKGVNKD TMSEETSETH 180 IRTSSISRTG FIPVVYRNLA KKRKKMSHKQ QIYMQQLGGT NIGATRAHHL YAATNGGYDS 240 VDATETEFRN NKRDLNSHIG DSDAQMLITK MENWKKNVAN FSFEYAVEDS QLTSPFWADE 300 MAKYNYREFG DTISFDATFR TNKYKMVFVP FTGIDNHRKC VTFGAGMLSN EMTKSYIWLL 360 RCFLKAFSKQ PRLVVTDQDP AMRKAVAAVF KELKHRLCMW HITNKLPFKF GVCIYIQKNL 420 WKDVPRYKTK LAIERHAAKI YTRTIFLLIQ DEINSVVYEC HQVSEVIEDG IEVLTIKELR 480 EIMPRKSKKK YNFEETEVQN RRDGTKKELR FKVSTNMSDG RRHVFCVMKG KGIEVVPDKY 540 ILRLWKRDIL PPDIRKKKHL WGSDAEKIMD LSTTAYSAVD YCLNILANDL PKLTEFVERI 600 KILRSEVEEA NPNAKPLTKK EMFNIQLGVE KPATNDVRNP TKCKNKGDPP AGQRMKGDLE 660 KVIEYMKKRR RYCRKCQKMR RHDIRNCKRK ENEVVTDSDS TVHSD

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MPPPLTRSMT PSFNQRNQRN VIESESESDG DEITDITGTS PENSEISILV PAIRYIVPAD  60
RYVVVFAADV GFLLLSGIHY IKQDDLDICE EVEVEGGDFH YKPIVDESLK PKIGREYATI  120
EECIKMYENY AEKAGFSVRL STQNTLKSGI VERKYLVCNK EGLPKGVNKD TMSEETSETH  180
IRTSSISRTG FIPVVYRNLA KKRKKMSHKQ QIYMQQLGGT NIGATRAHHL YAATNGGYDS  240
VDATETEFRN NKRDLNSHIG DSDAQMLITK MENWKKNVAN FSFEYAVEDS QLTSPFWADE  300
MAKYNYREFG DTISFDATFR TNKYKMVFVP FTGIDNHRKC VTFGAGMLSN EMTKSYIWLL  360
RCFLKAFSKQ PRLVVTDQDP AMRKAVAAVF KELKHRLCMW HITNKLPFKF GVCIYIQKNL  420
WKDVPRYKTK LAIERHAAKI YTRTIFLLIQ DEINSVVYEC HQVSEVIEDG IEVLTIKELR  480
EIMPRKSKKK YNFEETEVQN RRDGTKKELR FKVSTNMSDG RRHVFCVMKG KGIEVVPDKY  540
ILRLWKRDIL PPDIRKKKHL WGSDAEKIMD LSTTAYSAVD YCLNILANDL PKLTEFVERI  600
KILRSEVEEA NPNAKPLTKK EMFNIQLGVE KPATNDVRNP TKCKNKGDPP AGQRMKGDLE  660
KVIEYMKKRR RYCRKCQKMR RHDIRNCKRK ENEVVTDSDS TVHSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	205	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-37	FAR1 family protein