PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc022223.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37690.1 Da PI: 10.218 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.9e-18 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++q+G g+W++ +++ g++R++k+c++rw +yl Cse_sc022223.1_g030.1 29 KGPWTPEEDRKLLSYIQQYGHGSWRSLPAKAGLKRCGKSCRLRWTNYL 76 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ +++++++lG++ W+tIa++++ +Rt++++k++w+++ Cse_sc022223.1_g030.1 82 RGKFSLEEERTIIQLHALLGNR-WSTIAAHLP-RRTDNEIKNHWNSH 126 89********************.*********.***********987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence |
MTKSLGRNDK KKKQNSNSNI LGLGIGLKKG PWTPEEDRKL LSYIQQYGHG SWRSLPAKAG 60 LKRCGKSCRL RWTNYLRPDI KRGKFSLEEE RTIIQLHALL GNRWSTIAAH LPRRTDNEIK 120 NHWNSHIKKR MTKMGIDPMT HKPKSGTQLL GTNLNHMAQW EAARLEAEAR LVQKPKNHLN 180 QLSYNHVSPQ SLHDLHKTPT TLPAQNLPCL DVLKVWQGNL WSNYSINNES LQSLISRPKV 240 SVVTPIMPVL NNVESNGTCD QVPTMKRNDQ IETKIGPFDE FKYADDSNFI ISDPLRSPEF 300 WEEFVDVLDG GWNSLTNNFA LMASPPASPV F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 6e-72 | MYB family protein |