PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc021705.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 462aa    MW: 51908.8 Da    PI: 6.0314
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc021705.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.52.1e-137494591374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lL++cA++v++g+ e+a+  L+++++las dgd+mqR+aayfteALa+r+++ +++lyka+++++ +  ++se + + +lf++++
  Cse_sc021705.1_g020.1  49 LIHLLVACANHVAAGSIENANIGLEQINHLASADGDTMQRIAAYFTEALANRMLKGWPGLYKAINSTKIT--SVSEDILVKRLFFDLC 134
                            689*************************************************************999998..59************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P+l++s+l++NqaIlea+ege++vHiiD+  s+++QW++Llq++++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf
  Cse_sc021705.1_g020.1 135 PFLRLSYLITNQAILEAMEGEKMVHIIDLCSSEPAQWMNLLQSFSTRPEGPPHLRITGIHQ----EKEVLEQMALRLNEEAERLDIPF 218
                            *************************************************************....9********************** PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..........................................desvsles 222
                            +fn+ va+rl++le+e+Lr k+gEala+++vlqlh+ll                                          ++++s+++
  Cse_sc021705.1_g020.1 219 QFNP-VASRLDNLEIEALRYKSGEALAISSVLQLHTLLafddenkksppskqvlmnsktlgdflkkditnafspspdstsSSPLSMSN 305
                            ****.7************************************************************************9955555555 PP

                   GRAS 223 ..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                              +  ++L++++ lsPk++vv+eqe++hn+ s++er+l+al +y+alfd+le+++pr+s er+kvE++l+g+ei+n++aceg er+ r
  Cse_sc021705.1_g020.1 306 saKMMNILNTLWALSPKLMVVTEQESNHNGFSLMERVLQALIFYAALFDCLESTVPRASLERQKVEKMLFGEEIKNIIACEGLERKVR 393
                            446677********************************************************************************** PP

                   GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            he+lekW  rle aGF+ vpls++    a +ll++++ dgy+++ee+g++v++W+++pL+s+SaW+
  Cse_sc021705.1_g020.1 394 HEKLEKWVPRLELAGFRRVPLSYSGLLLATRLLQNYGYDGYKMKEENGCVVICWQNQPLYSISAWK 459
                            *****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    
MSGMAQEDGS SSISSSPLHL FSLMSLSPGI GSPYPWLREM ESEERGLYLI HLLVACANHV  60
AAGSIENANI GLEQINHLAS ADGDTMQRIA AYFTEALANR MLKGWPGLYK AINSTKITSV  120
SEDILVKRLF FDLCPFLRLS YLITNQAILE AMEGEKMVHI IDLCSSEPAQ WMNLLQSFST  180
RPEGPPHLRI TGIHQEKEVL EQMALRLNEE AERLDIPFQF NPVASRLDNL EIEALRYKSG  240
EALAISSVLQ LHTLLAFDDE NKKSPPSKQV LMNSKTLGDF LKKDITNAFS PSPDSTSSSP  300
LSMSNSAKMM NILNTLWALS PKLMVVTEQE SNHNGFSLME RVLQALIFYA ALFDCLESTV  360
PRASLERQKV EKMLFGEEIK NIIACEGLER KVRHEKLEKW VPRLELAGFR RVPLSYSGLL  420
LATRLLQNYG YDGYKMKEEN GCVVICWQNQ PLYSISAWKS IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein