PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc021419.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 474aa MW: 52929.9 Da PI: 9.653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 47 | 90 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+ Ed l+d+vk++ g++Wk+Ia+ ++ gR++ qc +rwqk+l Cse_sc021419.1_g030.1 47 WTEKEDSTLADVVKKFNGRNWKKIAESIP-GRSDVQCLHRWQKVL 90 *****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.1e-19 | 96 | 142 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G + W++Ia+++ gR +kqc++rw+++l Cse_sc021419.1_g030.1 96 KGPWTKEEDDRIKELVEKHGCKKWSLIAKHLA-GRIGKQCRERWHNHL 142 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.4 | 1.1e-15 | 148 | 191 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT E+ lv +++ +G++ W+ Iar ++ gRt++ +k++w++ Cse_sc021419.1_g030.1 148 KDAWTDAEESTLVYYHQVYGNK-WAEIARFLP-GRTDNAIKNHWNS 191 679*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence |
MAGVKDELLG FTSCSSISDS SCDANTPRSN CSRGSVGQTK RSSQAGWTEK EDSTLADVVK 60 KFNGRNWKKI AESIPGRSDV QCLHRWQKVL NPELVKGPWT KEEDDRIKEL VEKHGCKKWS 120 LIAKHLAGRI GKQCRERWHN HLDPAIKKDA WTDAEESTLV YYHQVYGNKW AEIARFLPGR 180 TDNAIKNHWN SSKRRLDLNM PPTFPTRAAS PELNLAKKRG RDISLVEQNT VEKELFKQST 240 ALEGDLNTCS TNLSLGNPKS GTTNDDRLGF TRYAKVHKIE PSTSLDETPK RLRVASVSDL 300 KLAASPDNSF LSLSTLTTEK HIVSGTPPYR SLCYQPPQVK NLTLLLENCG SPTTPPDLAL 360 SISVNNSSPE SILRNSALSY KNTPSIIRKR TPKKSVEPCT PGEAQTSHHW SENIKTLESE 420 NAKRGSEAWL HRPQPFLGRR LDYMFDAEKD PTLVRCCTPG SVTPSSKAKV MLTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-81 | MYB family protein |