PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc021252.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 325aa    MW: 36353.7 Da    PI: 6.7141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc021252.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  Cse_sc021252.1_g040.1 14 KGQWTPEEDHKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                           799*******************************************97 PP
2Myb_DNA-binding47.44.6e-1568110246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g ++  E++++v+++  lG++ W+ Ia+ ++ gRt++++k++w++
  Cse_sc021252.1_g040.1  68 GQFSDAEEQIIVRLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
                            7899*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRIPCCEKE SVKKGQWTPE EDHKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEQIIVR LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPYS HLMAEIANTL APPQVANLAE ATLGCLKDEM LHLLTKKHID IQFQSPGPTP  180
TMVNNSNGHM SPSYNMTSKH EETDDDTIEK IKIGLSRAII HDQETMTPSN KPWDNNGTSS  240
GNFPGFHYVL PSFGHEGEGS PWNQSMCTGS TCTAGDQQGQ FHSKMGDENG DESEGEKDQR  300
HVSSMFSPDC DLWDLPSNDL MNPLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-113MYB family protein