PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc021212.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 456aa MW: 51927.3 Da PI: 6.2064

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc021212.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.3	3.6e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C + H+ H++v Cse_sc021212.1_g020.1 17 ARACDNCIRKRARWYCAADDAFLCQSCDGSVHSAnplarrHERV 60 578*****************************657888888876 PP
2	CCT	67.9	2.7e-23	403	446	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Cse_sc021212.1_g020.1 403 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 446 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MVSSDKKLAN VVGGKTARAC DNCIRKRARW YCAADDAFLC QSCDGSVHSA NPLARRHERV 60 RLKVASLKLS SLDKPSPPPW HHGFTKKPRT PRGGNHHKQA SKKTPKSEES SMTFNPLHLV 120 PEIGSDEARN VTTEEQLLYQ VPVFDPFAAE LCLSGNSNEV ATPVKQTEVT TPTDHADHNH 180 DMHDHDHDHE DHQHGSKVTF DLNTLNGLML PSDMELAEFA ADVESLLGKG LDDESFAIDG 240 LGLMNCHEKD SCESLEKVKV EQDNDCEMVE CDMEMMREPF QLSFDYDSPL WEEKDEKIVV 300 DGDEHVCMVK VDQDDHVDID HIEKYDDDEK KKNKRILKLD YERIIAAWDD QRSPWTTGDR 360 PEFDLDDCWP VCMGGCGIMH HHHHPYGDTG MISGNPAMLD GGREARVSRY REKRRTRLFS 420 KKIRYEVRKL NAEKRPRMKG RFVKRASSLG FPLLSK

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MVSSDKKLAN VVGGKTARAC DNCIRKRARW YCAADDAFLC QSCDGSVHSA NPLARRHERV  60
RLKVASLKLS SLDKPSPPPW HHGFTKKPRT PRGGNHHKQA SKKTPKSEES SMTFNPLHLV  120
PEIGSDEARN VTTEEQLLYQ VPVFDPFAAE LCLSGNSNEV ATPVKQTEVT TPTDHADHNH  180
DMHDHDHDHE DHQHGSKVTF DLNTLNGLML PSDMELAEFA ADVESLLGKG LDDESFAIDG  240
LGLMNCHEKD SCESLEKVKV EQDNDCEMVE CDMEMMREPF QLSFDYDSPL WEEKDEKIVV  300
DGDEHVCMVK VDQDDHVDID HIEKYDDDEK KKNKRILKLD YERIIAAWDD QRSPWTTGDR  360
PEFDLDDCWP VCMGGCGIMH HHHHPYGDTG MISGNPAMLD GGREARVSRY REKRRTRLFS  420
KKIRYEVRKL NAEKRPRMKG RFVKRASSLG FPLLSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	414	430	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-96	CO-like family protein