PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc021183.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 789aa MW: 92126.8 Da PI: 9.2242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc021183.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.7	3.7e-08	89	134	46	90
FAR1 46 kktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 k+++k+ r++ + tgC a++ ++++ +g++e+tk++ +HnH + Cse_sc021183.1_g020.1 89 KSSDKQVRNTRQRVTGCMARIFITLDPiSGEYEITKFVAKHNHLMI 134 34678889999999*****************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence
MILCESYFDS VMKINVSNSF NVTHYTDSVM TPRPTLYAHE ETPGGSVYWE PVVDHIYLPV 60 EGKKFKTIEE CIEMEGVPKD ININTLDLKS SDKQVRNTRQ RVTGCMARIF ITLDPISGEY 120 EITKFVAKHN HLMIPKEYEH LTKKQRKMTQ AEKMFVVKAS NFRLGATKAH NLLCSMKGGS 180 QYVHGTSSDF KNHQRDINVC IGESDAQMLI NKMENRKKYV PNFTFHYMVE KSELVAMFWA 240 DEVAKCNYKE FGDIVSFDAT FRTNKIIYDS HGILNESHRV IYDSLRITYD SLRITYDSLR 300 IIYDSHRIPN ESHIIIYDSH IRYGVKIVIF RYDMVFVPFT GIDNHKKCVT LGAGMLLRED 360 EEAYTWLLKS FMTAHQKQPK MIVTDQDGAM KLAIEAVFTE SKHTLCMWHI TQKIPSKICK 420 KIYNETDFKK RFNKIVWNMF MEPLEFEEKW KKLIEDFGLQ DHKWMKKMFR LREMWLPAYF 480 IDSPLFGLMR TTSRSESENA FFRYFTNHGS TLVNFMMCFE SAMERQRYRQ EQLDFNTFDS 540 APKLSTELKM ERHAYKGCEI VRVKDRNAAA NRTLSKEKEE SEKVAEYKNR DVQSIPEKYI 600 LRRWRRDIIP PSLRRNTNRY GEKNEPIEKL TNEATFVVDE CLFLLSKDEA NLGKFVEQLK 660 SIKKKIEDEM PNPPLRKTRD VIKDIYAVEK PEKHVVKNPS NASNKGWSKE DRRKSGKEMA 720 LEGTSKRKRK CGFCGEKTNN HSKMTCPLNS KYIAKLARIA AEKQARTDAG EQATTNIETD 780 AGEQATNAS

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence

MILCESYFDS VMKINVSNSF NVTHYTDSVM TPRPTLYAHE ETPGGSVYWE PVVDHIYLPV  60
EGKKFKTIEE CIEMEGVPKD ININTLDLKS SDKQVRNTRQ RVTGCMARIF ITLDPISGEY  120
EITKFVAKHN HLMIPKEYEH LTKKQRKMTQ AEKMFVVKAS NFRLGATKAH NLLCSMKGGS  180
QYVHGTSSDF KNHQRDINVC IGESDAQMLI NKMENRKKYV PNFTFHYMVE KSELVAMFWA  240
DEVAKCNYKE FGDIVSFDAT FRTNKIIYDS HGILNESHRV IYDSLRITYD SLRITYDSLR  300
IIYDSHRIPN ESHIIIYDSH IRYGVKIVIF RYDMVFVPFT GIDNHKKCVT LGAGMLLRED  360
EEAYTWLLKS FMTAHQKQPK MIVTDQDGAM KLAIEAVFTE SKHTLCMWHI TQKIPSKICK  420
KIYNETDFKK RFNKIVWNMF MEPLEFEEKW KKLIEDFGLQ DHKWMKKMFR LREMWLPAYF  480
IDSPLFGLMR TTSRSESENA FFRYFTNHGS TLVNFMMCFE SAMERQRYRQ EQLDFNTFDS  540
APKLSTELKM ERHAYKGCEI VRVKDRNAAA NRTLSKEKEE SEKVAEYKNR DVQSIPEKYI  600
LRRWRRDIIP PSLRRNTNRY GEKNEPIEKL TNEATFVVDE CLFLLSKDEA NLGKFVEQLK  660
SIKKKIEDEM PNPPLRKTRD VIKDIYAVEK PEKHVVKNPS NASNKGWSKE DRRKSGKEMA  720
LEGTSKRKRK CGFCGEKTNN HSKMTCPLNS KYIAKLARIA AEKQARTDAG EQATTNIETD  780
AGEQATNAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	712	730	RRKSGKEMALEGTSKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-37	FAR1 family protein