PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020954.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 342aa MW: 38569.3 Da PI: 6.0865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020954.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.8e-13	158	200	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N++++ Lr+++P+ + K++ a+iL A+eY+k+L Cse_sc020954.1_g020.1 158 MAERRRRKKLNDRLFLLRSIVPNiS------KMDRASILGDAIEYVKKL 200 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MNNNHEYETN NMNSFNSLHE LEENNNNWYF SHHENNLSFA PSLPSTYQNF DIKTRFDSQP 60 HMDVPNITSN HHFPTNHLEN TYGASGFQSL GLMGSSSNTK SGDGPNTLVM DDVDDISFDE 120 SVLNYESDDV ARKMDSGVGN IGGYRKGKRK GFPAKNLMAE RRRRKKLNDR LFLLRSIVPN 180 ISKMDRASIL GDAIEYVKKL LQNVNDLNLE LESTPSTSLM PPIVAPTTTT GLYQLTPTAT 240 IVPSCIKEEV FQTGQPIKIE VRQREGGVLN IHMFCSQKHG LLYSVMRTLE DLGLDIQQAV 300 ISSFNGFALD VFRAKHYLEG QDVNLDQIKA MLRETAEYHG VM

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MNNNHEYETN NMNSFNSLHE LEENNNNWYF SHHENNLSFA PSLPSTYQNF DIKTRFDSQP  60
HMDVPNITSN HHFPTNHLEN TYGASGFQSL GLMGSSSNTK SGDGPNTLVM DDVDDISFDE  120
SVLNYESDDV ARKMDSGVGN IGGYRKGKRK GFPAKNLMAE RRRRKKLNDR LFLLRSIVPN  180
ISKMDRASIL GDAIEYVKKL LQNVNDLNLE LESTPSTSLM PPIVAPTTTT GLYQLTPTAT  240
IVPSCIKEEV FQTGQPIKIE VRQREGGVLN IHMFCSQKHG LLYSVMRTLE DLGLDIQQAV  300
ISSFNGFALD VFRAKHYLEG QDVNLDQIKA MLRETAEYHG VM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	166	KRKGFPAKNLMAERRRRKK
2	160	167	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	3e-71	bHLH family protein