PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020932.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 417aa MW: 47521.2 Da PI: 6.4137

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020932.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.9	1.4e-23	77	191	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkr 60 +Wt+++v++Li ++ ++++++++++ +kk++W++vsk+m+ergf +sp+qC++k+++lnkr Cse_sc020932.1_g020.1 77 KWTDNMVRLLIMVVFYIGDEVGSDQppagggdmvvkkksggggggggnghgvlQKKGKWKSVSKAMMERGFYVSPQQCEDKFNDLNKR 164 7*******************998889999999999*********************************************** PP trihelix 61 ykkikegekkr.tsessstcpyfdqle 86 yk+++++ +k+ +++++++ ++++++ Cse_sc020932.1_g020.1 165 YKRVNDILGKGiACKVVENQTLLESMD 191 *******89*********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
METNGIFSNS LGLEISLNHQ QNPNFILHHQ QPPYTTAPAK QYEEDEPHSN NTNNPTTTED 60 SGGDGKLRKG SPWQRMKWTD NMVRLLIMVV FYIGDEVGSD QPPAGGGDMV VKKKSGGGGG 120 GGGNGHGVLQ KKGKWKSVSK AMMERGFYVS PQQCEDKFND LNKRYKRVND ILGKGIACKV 180 VENQTLLESM DHIPKKLKEE VKKLLNSKHL FFREMCAYHN SCGGGATGVA SGVAHHSSPP 240 EVTTTTNQRQ ICVHSNHDDV DDDNDEGDDD VDEDEDDCEH FEEEDDGLSS RKRGRTMEND 300 VMHQFDGEVS VVMQDITKSV WEKRQWMKGR MMQLEEQRVG YQGQSYELKK QRLKWLKFCY 360 KKEREMEVEK LRNERVKLEN ERMVLLLKQK EMELVDLQHQ YASRVHKRTS DPSSING

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

METNGIFSNS LGLEISLNHQ QNPNFILHHQ QPPYTTAPAK QYEEDEPHSN NTNNPTTTED  60
SGGDGKLRKG SPWQRMKWTD NMVRLLIMVV FYIGDEVGSD QPPAGGGDMV VKKKSGGGGG  120
GGGNGHGVLQ KKGKWKSVSK AMMERGFYVS PQQCEDKFND LNKRYKRVND ILGKGIACKV  180
VENQTLLESM DHIPKKLKEE VKKLLNSKHL FFREMCAYHN SCGGGATGVA SGVAHHSSPP  240
EVTTTTNQRQ ICVHSNHDDV DDDNDEGDDD VDEDEDDCEH FEEEDDGLSS RKRGRTMEND  300
VMHQFDGEVS VVMQDITKSV WEKRQWMKGR MMQLEEQRVG YQGQSYELKK QRLKWLKFCY  360
KKEREMEVEK LRNERVKLEN ERMVLLLKQK EMELVDLQHQ YASRVHKRTS DPSSING

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	198	KRYKRVNDILGKGIACKVVENQTLLESMDHIPKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-95	Trihelix family protein