PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020921.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 524aa MW: 58892.2 Da PI: 6.7333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020921.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	347	391	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++N++f++Lr+l P+ K +Ka++L ++eYI+sL Cse_sc020921.1_g020.1 347 HMIAERKRREKLNESFQTLRSLFPPG-----SKKDKASVLSNTMEYISSL 391 889*******************95.....599************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MDSIFDLEET ERSRLLRQIM DSFGFTYICL WSHFSQPSNC LISIDGVYKE GNNQASSSSG 60 SLAMRSFLDY KKSMFLIDNY SGVPGFAFVH NITYMERNES ELINLASNSA QLRFYQVAGI 120 KTAIFMRSSN GEIELGMTND SSQINFEIEL KKLFPGDFPQ GVLPQQLEQA RASSSSSSLR 180 SLSMDNSVEN SPFLFNMLHS TPYMSEMFAL TEPHMDQQAP NQTPQSTRIL RSEYPLQQAL 240 EQSRTSQSLP SREHEEAAMT RAILAAIVST SAPTPSSSSP YQRQPPRVAS AFKRYGSSNL 300 GPTTQRVTNR QNLHRRSLSF LRNLSEARAQ RDQMVQTTRP TSNQLHHMIA ERKRREKLNE 360 SFQTLRSLFP PGSKKDKASV LSNTMEYISS LKSQVEELNK RNQILEADQR AGKEPPNQGS 420 SRFSGEGPVV GITDIGESTS DSRVVDLEVN ARGNVILVDL VMSVLEFIKQ TENVSVMSID 480 AGTQMLETEA IANRVILRLR IQGCEWDRSS FLEAVRRLLD DLAQ

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MDSIFDLEET ERSRLLRQIM DSFGFTYICL WSHFSQPSNC LISIDGVYKE GNNQASSSSG  60
SLAMRSFLDY KKSMFLIDNY SGVPGFAFVH NITYMERNES ELINLASNSA QLRFYQVAGI  120
KTAIFMRSSN GEIELGMTND SSQINFEIEL KKLFPGDFPQ GVLPQQLEQA RASSSSSSLR  180
SLSMDNSVEN SPFLFNMLHS TPYMSEMFAL TEPHMDQQAP NQTPQSTRIL RSEYPLQQAL  240
EQSRTSQSLP SREHEEAAMT RAILAAIVST SAPTPSSSSP YQRQPPRVAS AFKRYGSSNL  300
GPTTQRVTNR QNLHRRSLSF LRNLSEARAQ RDQMVQTTRP TSNQLHHMIA ERKRREKLNE  360
SFQTLRSLFP PGSKKDKASV LSNTMEYISS LKSQVEELNK RNQILEADQR AGKEPPNQGS  420
SRFSGEGPVV GITDIGESTS DSRVVDLEVN ARGNVILVDL VMSVLEFIKQ TENVSVMSID  480
AGTQMLETEA IANRVILRLR IQGCEWDRSS FLEAVRRLLD DLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	ERKRRE
2	352	357	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-54	bHLH family protein