PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020805.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 411aa MW: 47778.1 Da PI: 8.6229

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020805.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.4e-16	65	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA +v Fs+rks+sk++ +ge+t++ C++ gk++++ k + +++r+++ + t+Cka+++ + Cse_sc020805.1_g030.1 65 DMYLEYALKVRFSIRKSTSKRK--KGEVTHKYILCNRAGKPRTTIVKdtlaqssqtvdnqkdgtnKPRQKRNSNYSVTDCKACVRFRA 150 58*************99988..999**********99988889**********87667777888899******* PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc020805.1_g030.1 151 IHrTSAFKLYEFVENHNHPLL 171 9999*************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MLLCITYIQI HVIIANAYYS DLDDSELDDE CIPTPKGHKY WVPEVPADEK PSEGNVFDTF 60 DECYDMYLEY ALKVRFSIRK STSKRKKGEV THKYILCNRA GKPRTTIVKD TLAQSSQTVD 120 NQKDGTNKPR QKRNSNYSVT DCKACVRFRA IHRTSAFKLY EFVENHNHPL LDENNTDLLK 180 ARRKLDFSDK LFIHRASLSN LGPTKAHRLR VAFMGSYQKV RGKPSDWKNF RRSVNKYIGP 240 RDAQMLIDKM NDRKKYVPNF SFEYHTVDDV LSRMFWADET MKCNYNEFGD VVSFDATYRT 300 NRYRMIFVPF TGIDHNQKCV TFGVALISDE TIESYKWILT SFKKAHVKEP ILAVTDQDQA 360 LRTAVEAVIC DEQGHNMRKC KNRKGKKKAV QDNDSGFEEE DYDNELSDNA T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MLLCITYIQI HVIIANAYYS DLDDSELDDE CIPTPKGHKY WVPEVPADEK PSEGNVFDTF  60
DECYDMYLEY ALKVRFSIRK STSKRKKGEV THKYILCNRA GKPRTTIVKD TLAQSSQTVD  120
NQKDGTNKPR QKRNSNYSVT DCKACVRFRA IHRTSAFKLY EFVENHNHPL LDENNTDLLK  180
ARRKLDFSDK LFIHRASLSN LGPTKAHRLR VAFMGSYQKV RGKPSDWKNF RRSVNKYIGP  240
RDAQMLIDKM NDRKKYVPNF SFEYHTVDDV LSRMFWADET MKCNYNEFGD VVSFDATYRT  300
NRYRMIFVPF TGIDHNQKCV TFGVALISDE TIESYKWILT SFKKAHVKEP ILAVTDQDQA  360
LRTAVEAVIC DEQGHNMRKC KNRKGKKKAV QDNDSGFEEE DYDNELSDNA T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	377	384	MRKCKNRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-33	FAR1 family protein