PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020794.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 394aa MW: 47135.5 Da PI: 7.79

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020794.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	88	166	9	89
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++GF ++k ksk+ g ++ +f Cs++g++++e + ++ +r++++ +++C +l k k ++ w ++ HnH++ Cse_sc020794.1_g030.1 88 SIGFLIVKGKSKTD--RGYKYSIEFLCSRHGTSAREGLE-DELERQTSTAKINCPFRLLEKFIKrQNGWILKVKCPGHNHNF 166 68*****99998..6667************999.8888899999****999988788898888889**86 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MQLTLHQKSD SGNTTRRERE RERERERERE RVLPEERDKN NEYQQAETRE NHVRTHGFRM 60 KRVYTFRTTH VFGTEVDLTD WVRSTVESIG FLIVKGKSKT DRGYKYSIEF LCSRHGTSAR 120 EGLEDELERQ TSTAKINCPF RLLEKFIKRQ NGWILKVKCP GHNHNFPDSF HGFSQAMRLK 180 ESELVFVRQM TKQHVAPRII LSSLKEIDPN NVSTIKTEKL PNFKWVLECV KLVIQEQYYP 240 RIIVTDRDLA LLGACREEFP NANRLLCRWH INQNVLKHCR HRFDSVKEYE SIRWTWDLMV 300 TAPTEDVFTY YYQHLQDLLM RLVYGLPCYH QLFWLQANGL PIPLDFVDNF WRTLSFPWPV 360 IRNTQEPDEP EYPQEPQGPE EPEYFSCQDD VQKF

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MQLTLHQKSD SGNTTRRERE RERERERERE RVLPEERDKN NEYQQAETRE NHVRTHGFRM  60
KRVYTFRTTH VFGTEVDLTD WVRSTVESIG FLIVKGKSKT DRGYKYSIEF LCSRHGTSAR  120
EGLEDELERQ TSTAKINCPF RLLEKFIKRQ NGWILKVKCP GHNHNFPDSF HGFSQAMRLK  180
ESELVFVRQM TKQHVAPRII LSSLKEIDPN NVSTIKTEKL PNFKWVLECV KLVIQEQYYP  240
RIIVTDRDLA LLGACREEFP NANRLLCRWH INQNVLKHCR HRFDSVKEYE SIRWTWDLMV  300
TAPTEDVFTY YYQHLQDLLM RLVYGLPCYH QLFWLQANGL PIPLDFVDNF WRTLSFPWPV  360
IRNTQEPDEP EYPQEPQGPE EPEYFSCQDD VQKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	27	RERERERERER
2	19	29	RERERERERER
3	21	31	RERERERERER