PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020246.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 361aa MW: 41002.8 Da PI: 9.0445

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020246.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5e-12	44	100	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ ++ Aa a++ a++k++g Cse_sc020246.1_g010.1 44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEDAAAHAYDLAALKYWG 100 57*****************99998898888888*99***********98 PP
2	AP2	50.6	4.9e-16	143	194	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Cse_sc020246.1_g010.1 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 194 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MTKLLKQRVK IDEGTKMNTN SVVVTKAKRT RKTVPRDSPP RRSSIYRGVT RHRWTGRYEA 60 HLWDKNCWNE SQNKKGRQGA YDDEDAAAHA YDLAALKYWG PDTILNFPLM TYHKELKQME 120 GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AAVAYDMAAI EYRGLNAVTN FDLSRYIKWL RPDNNSTTDA PPNPSVNIIN ASLPPSSNHE 240 IGLNYLQNHH ETQPLQPSED AMVSPTVEAT MTYSSRSTSA TSALGLLLQS SKFKEMMEMT 300 TAAEFISTSS NSTVAPTCNK FPEEIQVHFE SQDFGGYNGG DDFIFGDLNF MHNMLHSDFE 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MTKLLKQRVK IDEGTKMNTN SVVVTKAKRT RKTVPRDSPP RRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEDAAAHA YDLAALKYWG PDTILNFPLM TYHKELKQME  120
GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE  180
AAVAYDMAAI EYRGLNAVTN FDLSRYIKWL RPDNNSTTDA PPNPSVNIIN ASLPPSSNHE  240
IGLNYLQNHH ETQPLQPSED AMVSPTVEAT MTYSSRSTSA TSALGLLLQS SKFKEMMEMT  300
TAAEFISTSS NSTVAPTCNK FPEEIQVHFE SQDFGGYNGG DDFIFGDLNF MHNMLHSDFE  360
K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-99	AP2 family protein