PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc019926.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 299aa    MW: 34256.5 Da    PI: 5.4845
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc019926.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.32.8e-1973167290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                             Y++YA e+GF vr+ ++++    g +++++f Cskeg+++ + k+         ++  +r r+e r++Cka + v ++  +k++v++
  Cse_sc019926.1_g050.1  73 AYKDYAAEAGFIVRRGHQTND--GGIVINKEFLCSKEGTKKVKVKEfdslkdncdAKAVKRIRSEFRINCKAIIYVVRS-GEKYRVKN 157
                            5***************98877..99********************9*******988888999**************999.9******* PP

                   FAR1  81 leleHnHela 90 
                            +++eHnH ++
  Cse_sc019926.1_g050.1 158 FVEEHNHGFF 167
                            *******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MRQNCDSMRQ NCASNEFVED ENLSADVNVE ENEEVNSPDF FTSTSMLIKP VVVKTLVPVE  60
GTLFDSVEEA YKAYKDYAAE AGFIVRRGHQ TNDGGIVINK EFLCSKEGTK KVKVKEFDSL  120
KDNCDAKAVK RIRSEFRINC KAIIYVVRSG EKYRVKNFVE EHNHGFFTAE DRHLQKSHRS  180
MSLAHQYFAI NASNLNIGPC MSFSFIAELL GGYENVGATK IDFKNMSRDI YSYIGKYDAQ  240
MIIDKFSILK ERDENFTYEF KTNTDGQLSC LFWSDDTSKR NYEAFGDVLS FDATYKTNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-25FAR1 family protein