PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019892.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 680aa MW: 80597.8 Da PI: 10.0878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019892.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.2e-19	31	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 ++Yn+YA+e+GF+v+ks++k++ + g +++++++C+keg +++ + + ++k+ r++ + tgC a++ ++++ g++++tk+ Cse_sc019892.1_g030.1 31 EMYNKYAEEAGFEVKKSAQKNT-KGGLVKSKHLMCNKEGVPKDININtldlksSDKQVRNTRQRVTGCMARIFITLDPiFGEYKITKF 117 58************998777.8888**********998888899998888889999999******************* PP FAR1 82 eleHnHela 90 +++HnH + Cse_sc019892.1_g030.1 118 VTKHNHLMI 126 ****875 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MIHWWMLRLW KKKIHLLFKG KKFKTIEECI EMYNKYAEEA GFEVKKSAQK NTKGGLVKSK 60 HLMCNKEGVP KDININTLDL KSSDKQVRNT RQRVTGCMAR IFITLDPIFG EYKITKFVTK 120 HNHLMIPKEY EHLTKKQRKM TQAEKMFVVK SSNFRLGTTK AHNLLCSMKG GSQYVHGTSS 180 DFKNHQRDIN VCVGESDPQM LINKMENRKK YVPNFTFHYK VEKSELVAMF WADEVAKCNY 240 KEFGDIVSFD ATFRTNKYDM VFVPFTGIDN HKKCVTLGAG MLLREDEEAY TWLLKSFMNT 300 HQKQPKMIIY KKIYNETDFK IRFNKIVWNM FMEPLEFEEK WKKLIEDFGL QDHKWMKKMF 360 RLREMWLPAY FIDYPLFGLM RTTSRSKSEN AFFRHFTNHG STLVNFMMCF ESAMERQRYR 420 QEQLDFNTFD SAPKLSTKLK MERHAYKVYT RSIFLLVQTE IKEACWSCTI EEFKTEEGCE 480 IVRVKDRNAA AYRTLSKEKE ESEKVAEYNV MRSLEDGLVE CTCRHFLRFG FLCRHTFCVL 540 KNRDVQRIPE KYILRRWRRD IIPPDEARLG KFVEQLKSIK KKIEDEMPNP PSRKTRDVIK 600 DIYAVEKPEI HVVKNPSNAS NKGWSKEDRK KSGKEMALEG TSKRKKKLGF CGEKTNNHSK 660 MTCPLNPKYS DKLARIATEK

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MIHWWMLRLW KKKIHLLFKG KKFKTIEECI EMYNKYAEEA GFEVKKSAQK NTKGGLVKSK  60
HLMCNKEGVP KDININTLDL KSSDKQVRNT RQRVTGCMAR IFITLDPIFG EYKITKFVTK  120
HNHLMIPKEY EHLTKKQRKM TQAEKMFVVK SSNFRLGTTK AHNLLCSMKG GSQYVHGTSS  180
DFKNHQRDIN VCVGESDPQM LINKMENRKK YVPNFTFHYK VEKSELVAMF WADEVAKCNY  240
KEFGDIVSFD ATFRTNKYDM VFVPFTGIDN HKKCVTLGAG MLLREDEEAY TWLLKSFMNT  300
HQKQPKMIIY KKIYNETDFK IRFNKIVWNM FMEPLEFEEK WKKLIEDFGL QDHKWMKKMF  360
RLREMWLPAY FIDYPLFGLM RTTSRSKSEN AFFRHFTNHG STLVNFMMCF ESAMERQRYR  420
QEQLDFNTFD SAPKLSTKLK MERHAYKVYT RSIFLLVQTE IKEACWSCTI EEFKTEEGCE  480
IVRVKDRNAA AYRTLSKEKE ESEKVAEYNV MRSLEDGLVE CTCRHFLRFG FLCRHTFCVL  540
KNRDVQRIPE KYILRRWRRD IIPPDEARLG KFVEQLKSIK KKIEDEMPNP PSRKTRDVIK  600
DIYAVEKPEI HVVKNPSNAS NKGWSKEDRK KSGKEMALEG TSKRKKKLGF CGEKTNNHSK  660
MTCPLNPKYS DKLARIATEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	629	647	RKKSGKEMALEGTSKRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-61	FAR1 family protein