PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019845.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 791aa MW: 85770.7 Da PI: 5.9086

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019845.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	317	337	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cse_sc019845.1_g030.1 317 PCPDFRK-GACRRGDMCEYAHG 337 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence
MCSAPAPEEN NNNTASSSTE SNELTTDKKK SNKMVMSPLT VETGDSFSSL LEYAANNDFE 60 GFKRSIETDD SAIDEVGLWY VRKKGSKQIG LEHRTPLMVA ATYGSLSVLK LIVEKSKVDV 120 NFACGPDKCT ALHCAASGGS VDAVEVVKVL LSVGADPNIE DVNGHRPVDV IIVPPKLSGV 180 RASLEEMLMS NASDGSLGDC KLTVSVATSS SWSPTLSSSP ENGSPCSPSE LVSSPTMSKF 240 NETPVNYTSE KKEYPIDPSL PDIKNSIYST DEFRMFSFKV RPCSRAYSHD WTECPFVHPG 300 ENARRRDPRK YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA 360 RRVCFFAHLP EELRPLYVST GSAVPSPRSS AAGASVMDMA AALNLLPGSP SSVSMMSPGF 420 NQQMSPSGNG GPHSPVGWPQ PNVPTLHLPG SNLQSSRLRS SLSARDIPPD DLSMLQDFES 480 QMLNDYACFS QSRPGSLSLN RSSRSKTLAP SNLEDLFSAE LTSSPRYSDQ AASSGVFSPS 540 HKSAVLNQFQ QQQSMLSPIN TNVFSPNNVD HALLQASFGV SSPGRMSPRS MDPISPMGAR 600 LSAFAQREKQ HQQLRSLSSR ELGTNIPFNV GSPVNNNNNI SSSWSKWGSP TGKVDWSVNA 660 DEFGKLKRSS SFELKNDGAE EPDLSWVQSL VKESPPEMMK NKXFIFLVKM GISNWESGLE 720 EPDLSWVQSL VKESPPEMMK NKSADAPPAS GNNGNGGAGG PSGEDLSRGE TTDHSVIGAW 780 LEQMQLDQLV A

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence

MCSAPAPEEN NNNTASSSTE SNELTTDKKK SNKMVMSPLT VETGDSFSSL LEYAANNDFE  60
GFKRSIETDD SAIDEVGLWY VRKKGSKQIG LEHRTPLMVA ATYGSLSVLK LIVEKSKVDV  120
NFACGPDKCT ALHCAASGGS VDAVEVVKVL LSVGADPNIE DVNGHRPVDV IIVPPKLSGV  180
RASLEEMLMS NASDGSLGDC KLTVSVATSS SWSPTLSSSP ENGSPCSPSE LVSSPTMSKF  240
NETPVNYTSE KKEYPIDPSL PDIKNSIYST DEFRMFSFKV RPCSRAYSHD WTECPFVHPG  300
ENARRRDPRK YHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA  360
RRVCFFAHLP EELRPLYVST GSAVPSPRSS AAGASVMDMA AALNLLPGSP SSVSMMSPGF  420
NQQMSPSGNG GPHSPVGWPQ PNVPTLHLPG SNLQSSRLRS SLSARDIPPD DLSMLQDFES  480
QMLNDYACFS QSRPGSLSLN RSSRSKTLAP SNLEDLFSAE LTSSPRYSDQ AASSGVFSPS  540
HKSAVLNQFQ QQQSMLSPIN TNVFSPNNVD HALLQASFGV SSPGRMSPRS MDPISPMGAR  600
LSAFAQREKQ HQQLRSLSSR ELGTNIPFNV GSPVNNNNNI SSSWSKWGSP TGKVDWSVNA  660
DEFGKLKRSS SFELKNDGAE EPDLSWVQSL VKESPPEMMK NKXFIFLVKM GISNWESGLE  720
EPDLSWVQSL VKESPPEMMK NKSADAPPAS GNNGNGGAGG PSGEDLSRGE TTDHSVIGAW  780
LEQMQLDQLV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein