PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019110.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 416aa MW: 47103.1 Da PI: 6.5981

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019110.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l+d+++++G+g +W + ++++g++R++k+c++rw++yl Cse_sc019110.1_g020.1 14 KGPWSSEEDAKLKDYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	30.7	7.5e-10	70	112	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++eEd ++ + + +W+ Ia+ ++ gRt++++k++w++ Cse_sc019110.1_g020.1 70 GFSEEEDNIICSLYINVEPYRWSIIAAQLP-GRTDNDIKNYWNT 112 699*************88******.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGRAPCCDKT NVKKGPWSSE EDAKLKDYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYINVEPYR WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG 120 RRKQSQANRI SGSSQDPTDR SGIESLSNSA IERLQLHMQL QSVENPNFHN SDNRLVWPCK 180 LNPIQEKLMQ NLQLVNESSN ALMMQNFSPA TPQKFEYYAQ SSNPLQKEYS SVSSMMLYGT 240 ENSLGINIPE SSSFVPESDG TKQPPSIELQ QCLAFQAEID ELLSNKGSTS LEGPHMNEFQ 300 GFKEMHGAKH DMTWWSNEFE ANSGSNSYPI LSLADKLLVV HNITSLVPIK LDVDKLNSSS 360 WCYLSKNICE GFEDYKHIQG EFTSGVDPSP HTAEWLKVDS IVRILLTLPD TIQEGR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGRAPCCDKT NVKKGPWSSE EDAKLKDYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYINVEPYR WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG  120
RRKQSQANRI SGSSQDPTDR SGIESLSNSA IERLQLHMQL QSVENPNFHN SDNRLVWPCK  180
LNPIQEKLMQ NLQLVNESSN ALMMQNFSPA TPQKFEYYAQ SSNPLQKEYS SVSSMMLYGT  240
ENSLGINIPE SSSFVPESDG TKQPPSIELQ QCLAFQAEID ELLSNKGSTS LEGPHMNEFQ  300
GFKEMHGAKH DMTWWSNEFE ANSGSNSYPI LSLADKLLVV HNITSLVPIK LDVDKLNSSS  360
WCYLSKNICE GFEDYKHIQG EFTSGVDPSP HTAEWLKVDS IVRILLTLPD TIQEGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-82	MYB family protein