PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc018288.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 549aa MW: 61484.8 Da PI: 6.3542

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc018288.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	1.9e-08	220	241	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ff G+C++G++C+F+H+ Cse_sc018288.1_g020.1 220 DPCKFFIM-GQCNRGANCNFSHD 241 587777.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MSERRRRSES LWDRQEEAVP QNETKEFHSS FLEGGLPKLS NLEANDILMS EDFSGQPSRD 60 LIQGNENSDR HGMKTNPAFD EWDSQNSSRP SDNTYGQPNR GAERRVGGKD RDRSRSRSLS 120 PHRSRGRDME RDRDMGRGNT RDQGRARSPS RGGGVIDQNT QVVHGSAXDR NSADHSRSKG 180 SDGYRKDATR REEGRDYQRS NRSGYDDQDY RRQSNRSVKD PCKFFIMGQC NRGANCNFSH 240 DLPKSGGHEG KSRDSIQPND SGNFDDNNKY WNGPSWNSLE SGGINEMPRD KWDPPGWNES 300 EKNSSILPQS TSDTYNMDMS SNQESQFTDA HNMISGPFTQ SEYNVASQFP SNLNTNESNL 360 QLNGSVEGMF LQLDGEKSEN DIPQASGLPQ NPNISSTLGS MSSLPISASS GAIIDSIVTN 420 EQNQMSVEPV GNEFNGNKIA ENPNVNAGKS EAQGKVEEGN ISNDEKAMRQ FKIALVEFVK 480 EILKPTWKEG KMSREVYKTI VKKVVEKVTS TIQGVQIPRT QEKIDQYLTF SKSKITKLVE 540 AYVGRLLKA

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MSERRRRSES LWDRQEEAVP QNETKEFHSS FLEGGLPKLS NLEANDILMS EDFSGQPSRD  60
LIQGNENSDR HGMKTNPAFD EWDSQNSSRP SDNTYGQPNR GAERRVGGKD RDRSRSRSLS  120
PHRSRGRDME RDRDMGRGNT RDQGRARSPS RGGGVIDQNT QVVHGSAXDR NSADHSRSKG  180
SDGYRKDATR REEGRDYQRS NRSGYDDQDY RRQSNRSVKD PCKFFIMGQC NRGANCNFSH  240
DLPKSGGHEG KSRDSIQPND SGNFDDNNKY WNGPSWNSLE SGGINEMPRD KWDPPGWNES  300
EKNSSILPQS TSDTYNMDMS SNQESQFTDA HNMISGPFTQ SEYNVASQFP SNLNTNESNL  360
QLNGSVEGMF LQLDGEKSEN DIPQASGLPQ NPNISSTLGS MSSLPISASS GAIIDSIVTN  420
EQNQMSVEPV GNEFNGNKIA ENPNVNAGKS EAQGKVEEGN ISNDEKAMRQ FKIALVEFVK  480
EILKPTWKEG KMSREVYKTI VKKVVEKVTS TIQGVQIPRT QEKIDQYLTF SKSKITKLVE  540
AYVGRLLKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-13	C3H family protein