PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc018277.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 659aa MW: 74099.6 Da PI: 10.0714

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc018277.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.5e-06	330	349	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C fa+ G C++G+ Ck+ H Cse_sc018277.1_g040.1 330 PCWSFAK-GSCRFGEACKYLH 349 677899.************ PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MTKTALLGVG NHQRKNYLPT VTEDPIVGRA QPKDTFWIRV RNEFNRLNFQ RRNKDMITSK 60 WKTLNRDCTK FNGFFKRAQK EHRSGESEMD VMKKAKQMYR DEHKSAPFSL GDAWEILRKH 120 KKWETLDPVD LTGDRLTWYQ EFFTDPNANT FRPDHISHSL LLTTPIMTHN TPPPTPTLTL 180 SDKLMAMNHL TTFVLEKLDV DAMNYSSWMY YFSHLCHGYG ILDHLVDPVA SSSTTPPTDL 240 PHKDAEWTKI DFIIRSWIFS TLAPSLRTLS QEPFPDLQTV RSLLTTHEMR LKSRVPNPLV 300 DATSASQMVL VAKNNPTPRR GTSLEKVNNP CWSFAKGSCR FGEACKYLHN GVHGKSTLLP 360 RTSGSVSAVS IVTRSDKDML QTLLAKFGLN ATNCFTNTSP VAYSVSQPSA LPFGLAHLSS 420 QPTHLAWVLF TRGSIAARVL STGVSAAAGK KSGLSTLPVQ FATGGSYQPA GSFPGVQLGQ 480 FMPGVQQPQA TYNPMGKRRA STKARSESTT STGGASTGGT SSSSQFTETM ANEYRIKRET 540 AQAAYRAQQV KDETITKLKE MKFLMIDTDG KDPNVVAWIN DEKDRIIKKY NLQPRQQMIE 600 RNQILACIIK GKPSHPRTCD QMLHACLPIQ YLLHEDLHLI KPGKEKNVEE YRVVVKNHH

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MTKTALLGVG NHQRKNYLPT VTEDPIVGRA QPKDTFWIRV RNEFNRLNFQ RRNKDMITSK  60
WKTLNRDCTK FNGFFKRAQK EHRSGESEMD VMKKAKQMYR DEHKSAPFSL GDAWEILRKH  120
KKWETLDPVD LTGDRLTWYQ EFFTDPNANT FRPDHISHSL LLTTPIMTHN TPPPTPTLTL  180
SDKLMAMNHL TTFVLEKLDV DAMNYSSWMY YFSHLCHGYG ILDHLVDPVA SSSTTPPTDL  240
PHKDAEWTKI DFIIRSWIFS TLAPSLRTLS QEPFPDLQTV RSLLTTHEMR LKSRVPNPLV  300
DATSASQMVL VAKNNPTPRR GTSLEKVNNP CWSFAKGSCR FGEACKYLHN GVHGKSTLLP  360
RTSGSVSAVS IVTRSDKDML QTLLAKFGLN ATNCFTNTSP VAYSVSQPSA LPFGLAHLSS  420
QPTHLAWVLF TRGSIAARVL STGVSAAAGK KSGLSTLPVQ FATGGSYQPA GSFPGVQLGQ  480
FMPGVQQPQA TYNPMGKRRA STKARSESTT STGGASTGGT SSSSQFTETM ANEYRIKRET  540
AQAAYRAQQV KDETITKLKE MKFLMIDTDG KDPNVVAWIN DEKDRIIKKY NLQPRQQMIE  600
RNQILACIIK GKPSHPRTCD QMLHACLPIQ YLLHEDLHLI KPGKEKNVEE YRVVVKNHH