PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc018040.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 28924.9 Da PI: 9.7784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.7e-50 | 23 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL++kv++k+l++ + ik++diyk++PwdLpk+ + +++e yfF+kr +ky+++ r+nr+t+sg+Wkatg d+ Cse_sc018040.1_g010.1 23 PGFRFHPTDEELVGFYLRRKVDKKPLNF-DLIKQIDIYKYDPWDLPKTSDMRDNERYFFCKRGRKYRNSIRPNRVTDSGFWKATGIDR 109 9*************************99.99***************98888999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s+ ++ +glkk+Lv+y+g+a kg+kt+W+mhe+rl Cse_sc018040.1_g010.1 110 PVYSStRSVCIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 148 ****856667***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MDTEKMKVIS KRQVDEDENI PLPGFRFHPT DEELVGFYLR RKVDKKPLNF DLIKQIDIYK 60 YDPWDLPKTS DMRDNERYFF CKRGRKYRNS IRPNRVTDSG FWKATGIDRP VYSSTRSVCI 120 GLKKSLVYYR GSAGKGTKTE WMMHEFRLPP SSPKNINHLD DVSISLEAEV WTLCRILKRN 180 VSNRKVVPDW RELSVKRNPV VDTGSKTCSE DSDHEMKSYI SFQNPSIQLN HEKNLYNHTN 240 GMNHLT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-86 | NAC family protein |