PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc017906.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 397aa MW: 44879.5 Da PI: 8.1212

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc017906.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Cse_sc017906.1_g020.1 70 YVCEICNQGFQRDQNLQMHRRRH 92 9*********************9 PP
2	zf-C2H2	15.6	4.5e-05	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Cse_sc017906.1_g020.1 147 WVCDKCSKGYAVQSDYKAHLKTC 169 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MLDNHHQHHH HFATSSGPST VPSSSSDLFI SSDNGLGHPN KRKRRPAGTP DPDAEVVSLS 60 PKTLLESDQY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RDSPEIKKRV FVCPEPSCLH 120 HDPCHALGDL VGIKKHFRRK HSNNKQWVCD KCSKGYAVQS DYKAHLKTCG TRGHSCDCGR 180 VFSRVESFIE HQDACTVRRI HADLPMFQPA CSSRTTSSTS PSSDKNFNAI PTMTRFPPPP 240 QSVFSETQED IQNNLELQLL PSLSLYEQNI NHHQTHLNLS IGNGQKLQKE EEMKMAMADK 300 AFAEDARQQA KRQIEMAEIE FENAKRIRQQ AQVELERAKV LREQATKKIG STMLDITCYS 360 CRQRFEAASN NVIVPAADET SIAPSYMSSA ITEGEGD

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MLDNHHQHHH HFATSSGPST VPSSSSDLFI SSDNGLGHPN KRKRRPAGTP DPDAEVVSLS  60
PKTLLESDQY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RDSPEIKKRV FVCPEPSCLH  120
HDPCHALGDL VGIKKHFRRK HSNNKQWVCD KCSKGYAVQS DYKAHLKTCG TRGHSCDCGR  180
VFSRVESFIE HQDACTVRRI HADLPMFQPA CSSRTTSSTS PSSDKNFNAI PTMTRFPPPP  240
QSVFSETQED IQNNLELQLL PSLSLYEQNI NHHQTHLNLS IGNGQKLQKE EEMKMAMADK  300
AFAEDARQQA KRQIEMAEIE FENAKRIRQQ AQVELERAKV LREQATKKIG STMLDITCYS  360
CRQRFEAASN NVIVPAADET SIAPSYMSSA ITEGEGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-140	C2H2 family protein