PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc017681.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 693aa    MW: 76627.2 Da    PI: 5.3609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc017681.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4386.9e-1343276921374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal..ppsetseknsseelaalklfs 85 
                            lv+lLl+cAeav+++d+  a+++L +l+  +sp gd+mqR+a++fteAL arla   +++ +++   p+ +  + n  e l+++++ +
  Cse_sc017681.1_g030.1 327 LVHLLLACAEAVAKEDFMSARKYLHHLNRVVSPLGDSMQRVASCFTEALTARLAAtLTTKPSSSTpkPAFTPFPPNAMEILKIYQIVY 414
                            68****************************************************942233333331222333344599********** PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                            +++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+gpp lRiTg+gs    s e + etg+ L+++A++l+
  Cse_sc017681.1_g030.1 415 QACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGPPFLRITGIGS----SPECVTETGRCLSELAHSLH 498
                            ****************************************************************....9******************* PP

                   GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                            vpfef++ v ++ledle+++++ + gEalaVn+v +l+r++   ++l +    +L ++++  P++v++veqea+hn++ Fl rfleal
  Cse_sc017681.1_g030.1 499 VPFEFHA-VGEELEDLEPHMFNRRVGEALAVNSVNRLQRVP--GQCLGN----LLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEAL 579
                            *******.7*******************************9..555555....*********************************** PP

                   GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                            +yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vacegaer++rhe+lekWr+ +e  GFk v+lse+a++q k ll+ ++ dgy
  Cse_sc017681.1_g030.1 580 HYYSAIFDSLDATFPADSAQRAKVEQYIFAPEIRNIVACEGAERVMRHERLEKWRKIMEGKGFKGVALSENAVTQSKILLSLYSCDGY 667
                            **************************************************************************************** PP

                   GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                            r+ e++g+l+lgW+dr+L+++SaWr
  Cse_sc017681.1_g030.1 668 RLTEDKGCLLLGWQDRSLLAASAWR 692
                            ************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    
MIHASMSTSL QNDMNTLINE SSCLKLQPTS PNDSDNTKKT PPPPSSSSSD LTPSSLTFPS  60
LKYEPLDHGD MEIQSPDTNS LWESFFSEQL ETDFMISSPV RTSAPSSSQS SSFNHYPNNN  120
NLLNGHAAYS CSPPRTASPL APFNNNNVNK PKGMSPLQRV FSNSPNNQFM EVETISLPSL  180
ENFLNELEGD DDFLSYSTTG IAGASTSDQS YDSLTTIPAL LDCLTLPSPS RFYGEANATV  240
HGGGCLGGSS TENDQMYQQM RPAAAPSSAP LMEQLEQERR EEKQHRQQQQ PRQHVPSRLQ  300
PQQPMSHNHL MVPPPVGAEE HDSGLQLVHL LLACAEAVAK EDFMSARKYL HHLNRVVSPL  360
GDSMQRVASC FTEALTARLA ATLTTKPSSS TPKPAFTPFP PNAMEILKIY QIVYQACPYI  420
KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA LAARPGGPPF LRITGIGSSP  480
ECVTETGRCL SELAHSLHVP FEFHAVGEEL EDLEPHMFNR RVGEALAVNS VNRLQRVPGQ  540
CLGNLLAMIR DQAPNIVTIV EQEASHNGPY FLGRFLEALH YYSAIFDSLD ATFPADSAQR  600
AKVEQYIFAP EIRNIVACEG AERVMRHERL EKWRKIMEGK GFKGVALSEN AVTQSKILLS  660
LYSCDGYRLT EDKGCLLLGW QDRSLLAASA WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-94GRAS family protein