PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc017226.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 375aa MW: 42188.2 Da PI: 6.5472

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc017226.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	160	205	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + E+ RR+++N +f+ L+ l+P++ +K++ a+++ A+ YI++L Cse_sc017226.1_g030.1 160 KHFATEKHRRQQLNGKFDALKNLVPNP-----TKPDRASVVGDAICYIHEL 205 79***********************.....9*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MLDNSDMFEP NTYNLDPNTL SHLIDHHHNH SLNNQEPQQL NWTNNLNNLN VQTNQPDLLN 60 LFQLPKCSSS ICFSNPSHMD QVQQVMYHDH HGTLLGMHTS NNTNVGVTQN VPYIRELLNN 120 GFSLNGCNAS IFGEMGMENN GGCDGILEFG KNGGNKDNVK HFATEKHRRQ QLNGKFDALK 180 NLVPNPTKPD RASVVGDAIC YIHELKGTVK ELKHLVDRKR CNRGGMKKHK TEDDSTLDVE 240 SIYTMSNGVV GDTTHDQQAY NGNSSSTMRS SMVQRKSKHT EIDVRIIDDE VTIKFVQQKR 300 INCLLLVSNV LDELQLDLHH VAGGLIGDFY SYMFNTKICE GSSVYATAIA NKLIEVVDKQ 360 YVANPSYEYL YGLGY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MLDNSDMFEP NTYNLDPNTL SHLIDHHHNH SLNNQEPQQL NWTNNLNNLN VQTNQPDLLN  60
LFQLPKCSSS ICFSNPSHMD QVQQVMYHDH HGTLLGMHTS NNTNVGVTQN VPYIRELLNN  120
GFSLNGCNAS IFGEMGMENN GGCDGILEFG KNGGNKDNVK HFATEKHRRQ QLNGKFDALK  180
NLVPNPTKPD RASVVGDAIC YIHELKGTVK ELKHLVDRKR CNRGGMKKHK TEDDSTLDVE  240
SIYTMSNGVV GDTTHDQQAY NGNSSSTMRS SMVQRKSKHT EIDVRIIDDE VTIKFVQQKR  300
INCLLLVSNV LDELQLDLHH VAGGLIGDFY SYMFNTKICE GSSVYATAIA NKLIEVVDKQ  360
YVANPSYEYL YGLGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-72	bHLH family protein