PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016969.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 1085aa MW: 121814 Da PI: 7.8126

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016969.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.1	5.5e-19	738	818	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev++ i++r e+++r++ k +++lWee+s++++ +gf+rsp qCk+ w +l ++y++ k+ + +++++y++++e Cse_sc016969.1_g010.1 738 RWKPEEVKKFIKFRGELNSRFQVVKGRMALWEEISANLSNEGFSRSPGQCKSLWASLVQKYEESKNEPET-----KKSWQYYEDME 818 8***********************************************************99988886.....357*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence
MAMPAINGIS HCHHRLWLQP NTSKLPVSCF MPPPSHTGTH GSRSGPKRSG RLEGAGKSME 60 DSVQRKMEKF YEGPNGPPLR ILPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDELGV 120 QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DIRTPIFASS FTMELIKKRL 180 KEFGIFVPSR LKTFKTKKKF VAGPFEIEPI RVTHSIPDCS GLVLRCSDGV ILHTGDWKID 240 ESPLDGQVFD REGLEELSKE GVTLMMSDST NVLSPGRTTS ETVVADSLLR HITSAKGRVI 300 TTQFSSNIHR LGSVKAAADL AGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLAEPRAALN 360 LASYGSSHFF KLNKEDTILY SAKVIPGNES RVMKMMNRLS EIGPTIVMGK NEQLHTSGHA 420 YREELQEVLR IVKPQHFLPV HGELLFLKEH EVLGRSTGIH HTAVIKNGEM LGVSHLRNRR 480 VLSNGFASLG KQNLQLMYSD GDKAFGTSTD LCVDERMKIA TDGVIVVSIE IMRPQSTESL 540 FKENIKGKIR ITTRCLWLDN GKLLDALHSA AHASLSSCSI KSPLPHIERT VSEVLRKMVR 600 KYSGKRPEVI THAIENPAAV LADEINGKLA GVQPGFEMPF VKKETMDGSQ KKKRSTKTQE 660 ERKNLDLSVN QHDVINNDGL LSEEEEETAT SSDSAGSSVS DTESSDNFWK AYTKPESVDQ 720 SENDSNDSNA KKPIKRNRWK PEEVKKFIKF RGELNSRFQV VKGRMALWEE ISANLSNEGF 780 SRSPGQCKSL WASLVQKYEE SKNEPETKKS WQYYEDMENV LSTPDAISQF KVPKSHEPAK 840 GTKKKTKEKK SKQAVDLDAD DDEDVEVIGQ EDMRKWSKAE ERLLAQCWIE ISQDRDMRND 900 RSEDFFWNDI MDMFNNQTTD DQHTKNMITG KWSRINGDCQ KFNAICKYLQ RRSGENDHDH 960 VENAKLSFEQ HYAGKEFGYP IDVTCLEDIF GPDKRPRPER DGGRKSRAAK KQKSTSTSSI 1020 ASSSGSQSST FSGHISEKYA QKADAQMAYY EARQEKEIAV LEMKEMEFLM LNPRLTDDPA 1080 KAEII

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence

MAMPAINGIS HCHHRLWLQP NTSKLPVSCF MPPPSHTGTH GSRSGPKRSG RLEGAGKSME  60
DSVQRKMEKF YEGPNGPPLR ILPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDELGV  120
QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DIRTPIFASS FTMELIKKRL  180
KEFGIFVPSR LKTFKTKKKF VAGPFEIEPI RVTHSIPDCS GLVLRCSDGV ILHTGDWKID  240
ESPLDGQVFD REGLEELSKE GVTLMMSDST NVLSPGRTTS ETVVADSLLR HITSAKGRVI  300
TTQFSSNIHR LGSVKAAADL AGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLAEPRAALN  360
LASYGSSHFF KLNKEDTILY SAKVIPGNES RVMKMMNRLS EIGPTIVMGK NEQLHTSGHA  420
YREELQEVLR IVKPQHFLPV HGELLFLKEH EVLGRSTGIH HTAVIKNGEM LGVSHLRNRR  480
VLSNGFASLG KQNLQLMYSD GDKAFGTSTD LCVDERMKIA TDGVIVVSIE IMRPQSTESL  540
FKENIKGKIR ITTRCLWLDN GKLLDALHSA AHASLSSCSI KSPLPHIERT VSEVLRKMVR  600
KYSGKRPEVI THAIENPAAV LADEINGKLA GVQPGFEMPF VKKETMDGSQ KKKRSTKTQE  660
ERKNLDLSVN QHDVINNDGL LSEEEEETAT SSDSAGSSVS DTESSDNFWK AYTKPESVDQ  720
SENDSNDSNA KKPIKRNRWK PEEVKKFIKF RGELNSRFQV VKGRMALWEE ISANLSNEGF  780
SRSPGQCKSL WASLVQKYEE SKNEPETKKS WQYYEDMENV LSTPDAISQF KVPKSHEPAK  840
GTKKKTKEKK SKQAVDLDAD DDEDVEVIGQ EDMRKWSKAE ERLLAQCWIE ISQDRDMRND  900
RSEDFFWNDI MDMFNNQTTD DQHTKNMITG KWSRINGDCQ KFNAICKYLQ RRSGENDHDH  960
VENAKLSFEQ HYAGKEFGYP IDVTCLEDIF GPDKRPRPER DGGRKSRAAK KQKSTSTSSI  1020
ASSSGSQSST FSGHISEKYA QKADAQMAYY EARQEKEIAV LEMKEMEFLM LNPRLTDDPA  1080
KAEII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	994	998	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein