PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016876.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 553aa MW: 61447.6 Da PI: 6.4239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016876.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.1e-11	339	384	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k s +++L +Av++Ik+Lq Cse_sc016876.1_g020.1 339 SIAERVRRTRISDRMKKLQELFPSI----DKQTSTSDMLDMAVQHIKDLQ 384 689*******************5....578***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MYGHGGSSDA IAKDMNSVLH SSTFKHPSDG EFAKTKELIS SNSYSNYNHH EHNNHSSSQN 60 QNQNQNQSQL QNQNQHRPNI GGQTKASLTS YRSAPSSFFA NLLDENDFFS PLDNTNNEPD 120 DSFFSRQPQQ QTFQPSSKSM KLEAEKEGIR VSSDMYGGNT QQVSHMQPTN NNGNYNHHSN 180 HNGDMDSSST FRSMNSNNNL IRQSSSPAGF LSALNSENGF ASMRDVDKSV PSSRLNNHIS 240 FSSDTSSSSM FLPQIPENGN NMNDSTFMSL KRTRDGDSSL TLDRQNGASG QYTPTLIHHM 300 SLPKTSSEMA VAEKFLRFDQ DSTPCKTRAK RGCATHPRSI AERVRRTRIS DRMKKLQELF 360 PSIDKQTSTS DMLDMAVQHI KDLQKDLQFV DFPRLIFSLS RYEAVIDAYL DGLEASGLDD 420 LSKVTSVASF FVSRVDSLVD EMLEKIGTPE ALDLQRKAAN AQAALAFQLY QKKFSGPEVS 480 TVPDQALLAF IDHGTVGRTI NANVSEAEEK LGISWSVVGS QLENEGVDSF KKSFDSLLDR 540 LQEKANSMKF VSL

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MYGHGGSSDA IAKDMNSVLH SSTFKHPSDG EFAKTKELIS SNSYSNYNHH EHNNHSSSQN  60
QNQNQNQSQL QNQNQHRPNI GGQTKASLTS YRSAPSSFFA NLLDENDFFS PLDNTNNEPD  120
DSFFSRQPQQ QTFQPSSKSM KLEAEKEGIR VSSDMYGGNT QQVSHMQPTN NNGNYNHHSN  180
HNGDMDSSST FRSMNSNNNL IRQSSSPAGF LSALNSENGF ASMRDVDKSV PSSRLNNHIS  240
FSSDTSSSSM FLPQIPENGN NMNDSTFMSL KRTRDGDSSL TLDRQNGASG QYTPTLIHHM  300
SLPKTSSEMA VAEKFLRFDQ DSTPCKTRAK RGCATHPRSI AERVRRTRIS DRMKKLQELF  360
PSIDKQTSTS DMLDMAVQHI KDLQKDLQFV DFPRLIFSLS RYEAVIDAYL DGLEASGLDD  420
LSKVTSVASF FVSRVDSLVD EMLEKIGTPE ALDLQRKAAN AQAALAFQLY QKKFSGPEVS  480
TVPDQALLAF IDHGTVGRTI NANVSEAEEK LGISWSVVGS QLENEGVDSF KKSFDSLLDR  540
LQEKANSMKF VSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-54	bHLH family protein