PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016739.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 442aa MW: 49072.1 Da PI: 5.4756

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016739.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.5	1.1e-07	244	278	11	45
RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 +F l+ +AA +Lg+ + +CR+ GI+ WP Cse_sc016739.1_g020.1 244 VPHFGLSSVAAAEKLGLTKGTFRNACRNVGIPEWP 278 56899****************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MSTGWTDQTR SGNLKVSSGE PFFRRSPNFT FPKGLYVTDI NVSTTEELKQ KIIFVIRNSP 60 IQGQNVLVQY WAAKQTGKTS ILTTTCQPFG LYGINQQLDS YRKGCLEHKL YVYVDPKILD 120 KGVAVGLPGR AFLNCTPEQT QNVHNIPKEQ RPPCEDAIFS KVWGSFAVPV IVDGRCVGVL 180 DFVMDTSEDS YDIHIGEICK LLQHVGLQSA IQTNCPRRAC ISINGRKRIR KTQSFPHTYY 240 FRLVPHFGLS SVAAAEKLGL TKGTFRNACR NVGIPEWPAI PSTNIRVTRT SCAPESRYSQ 300 TLSETGSSGI SVADSICSDE GSSEWSREQT QTPIASSSEN QTNQTVSETS LITDDLTSYW 360 DQGVFEGSLE ELITMTNAPT PETEMNQIAS LTSYTKALLK SEYDETAYQG NETTVLEDLD 420 HHTFVKSLAF VFEDAPEMTS IT

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MSTGWTDQTR SGNLKVSSGE PFFRRSPNFT FPKGLYVTDI NVSTTEELKQ KIIFVIRNSP  60
IQGQNVLVQY WAAKQTGKTS ILTTTCQPFG LYGINQQLDS YRKGCLEHKL YVYVDPKILD  120
KGVAVGLPGR AFLNCTPEQT QNVHNIPKEQ RPPCEDAIFS KVWGSFAVPV IVDGRCVGVL  180
DFVMDTSEDS YDIHIGEICK LLQHVGLQSA IQTNCPRRAC ISINGRKRIR KTQSFPHTYY  240
FRLVPHFGLS SVAAAEKLGL TKGTFRNACR NVGIPEWPAI PSTNIRVTRT SCAPESRYSQ  300
TLSETGSSGI SVADSICSDE GSSEWSREQT QTPIASSSEN QTNQTVSETS LITDDLTSYW  360
DQGVFEGSLE ELITMTNAPT PETEMNQIAS LTSYTKALLK SEYDETAYQG NETTVLEDLD  420
HHTFVKSLAF VFEDAPEMTS IT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	233	GRKRIRKTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	3e-18	Nin-like family protein