PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc016562.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 276aa    MW: 30440.4 Da    PI: 5.2677
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc016562.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1771.9e-55821861102
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql+sfw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Cse_sc016562.1_g040.1  82 QLQSFWANQyreIENVNDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169
                            89******99999*************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdelk 102
                            t+ifdflvdivpr+++k
  Cse_sc016562.1_g040.1 170 TEIFDFLVDIVPREDIK 186
                            *************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MDPQGHGQPQ GSNIMTNVPQ LPYATNPYDQ TQISGTPGRG PIVPPGGVAL QAATQPTAAQ  60
LAQQQMAYHQ IQQQQQQQLQ QQLQSFWANQ YREIENVNDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPIV FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT EIFDFLVDIV  180
PREDIKEEVM TSMPTVNVPV GGPSDTFPYY YMAPQHSPQS GAPGMISNKP MMDPAASTIY  240
GSSNVATATS AATVTFGFID AIAYSFFASF GTALNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.34e-72NF-YC family protein