PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016122.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 594aa MW: 67479.1 Da PI: 7.8911

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016122.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.2	1.7e-10	127	201	23	90
FAR1 23 krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 r+g ++++ +vC++eg ++ + + ++k++r+++ + tgCka+++ ++ + k+++t +++ HnHel Cse_sc016122.1_g030.1 127 LRSGIVKQKYLVCNREGCPKGIHVDtldlenSDKQKRSSNLHITGCKARVMFELIPgSTKYKLTVFDSIHNHELE 201 5678899999******99988888999888899999999***********9**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MDSIPNSSVS SDRSSSITES DRSSSDLSSD PFSSITESAT ESDRSSSITE NVVVSITESA 60 TEDIVVSDDV SAKYTEEIVA YEHDDESAAI KKLNALKTPE SFSTHSNFDT PGGTVYYIPK 120 VPVDKRLRSG IVKQKYLVCN REGCPKGIHV DTLDLENSDK QKRSSNLHIT GCKARVMFEL 180 IPGSTKYKLT VFDSIHNHEL ERKEYKHLSK TERQLTYAEQ LFIVKVASVN IGATRAHHLL 240 TGLKGSYLLV HGTTVDFKNF FRSVQNDICS KIYDHTDFKR KFNQIVWNMY IGPDEFEYQW 300 GKLLDEFNLH NHKWLTKMFR IRSCWIPAFF VDSPLCGLMR TTSRSESENS FFSHFTNSDT 360 KSLVEGSEVS VIKEKKFVDE LMEKKKAKKK EKFKKKGDDN DKNEVEEEPI NLFHREDRLY 420 KNANVEMIPN QYILRRWTKN LIPAGLRNKR NKYGEKNEIV ENYANEATSI VDHRVHMLSK 480 DETRLAAFIE KLKLLKLDVE ADCPNPPSKD KLDNLEELVG VPKPPVVAVK NPSGCKPKGR 540 EKSCIKGGKE QAIDESSVNR NACSVCGAKD GHNKRTCPNK YRVQDDLVQS EATS

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MDSIPNSSVS SDRSSSITES DRSSSDLSSD PFSSITESAT ESDRSSSITE NVVVSITESA  60
TEDIVVSDDV SAKYTEEIVA YEHDDESAAI KKLNALKTPE SFSTHSNFDT PGGTVYYIPK  120
VPVDKRLRSG IVKQKYLVCN REGCPKGIHV DTLDLENSDK QKRSSNLHIT GCKARVMFEL  180
IPGSTKYKLT VFDSIHNHEL ERKEYKHLSK TERQLTYAEQ LFIVKVASVN IGATRAHHLL  240
TGLKGSYLLV HGTTVDFKNF FRSVQNDICS KIYDHTDFKR KFNQIVWNMY IGPDEFEYQW  300
GKLLDEFNLH NHKWLTKMFR IRSCWIPAFF VDSPLCGLMR TTSRSESENS FFSHFTNSDT  360
KSLVEGSEVS VIKEKKFVDE LMEKKKAKKK EKFKKKGDDN DKNEVEEEPI NLFHREDRLY  420
KNANVEMIPN QYILRRWTKN LIPAGLRNKR NKYGEKNEIV ENYANEATSI VDHRVHMLSK  480
DETRLAAFIE KLKLLKLDVE ADCPNPPSKD KLDNLEELVG VPKPPVVAVK NPSGCKPKGR  540
EKSCIKGGKE QAIDESSVNR NACSVCGAKD GHNKRTCPNK YRVQDDLVQS EATS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	7e-12	FAR1 family protein