PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc015644.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 484aa MW: 54155.1 Da PI: 9.0819

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc015644.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.2e-14	58	96	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d ll ++v+++ g++Wk+Ia++++ gRt+ qc +rwqk+l Cse_sc015644.1_g020.1 58 DNLLCEVVRKYNGRNWKKIAERIP-GRTDVQCLHRWQKVL 96 6799******************.**********986 PP
2	Myb_DNA-binding	50.9	3.5e-16	102	148	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + ++vk G W++Ia+ ++ gR +kqc++rw+++l Cse_sc015644.1_g020.1 102 KGPWTKEEDDHIMKLVKANGCMKWSLIAKDLP-GRIGKQCRERWHNHL 148 79****************99******.***********97 PP
3	Myb_DNA-binding	52.2	1.4e-16	154	196	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++eE+ l +++ +G++ W+ Ia++++ gRt++ +k++w+ Cse_sc015644.1_g020.1 154 RESWSKEEESTLTYYHRIHGNK-WAEIAKHLP-GRTDNAIKNHWN 196 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MKREAQEVGL ASSSSLSDSS YDAITPRSRS MLGNITQTKR SSQAGWTDDE VGWYLCADNL 60 LCEVVRKYNG RNWKKIAERI PGRTDVQCLH RWQKVLNPEI IKGPWTKEED DHIMKLVKAN 120 GCMKWSLIAK DLPGRIGKQC RERWHNHLDP AIKRESWSKE EESTLTYYHR IHGNKWAEIA 180 KHLPGRTDNA IKNHWNCSLK KKLDLNMPPN LPTNIHQTKH KELNNSETRN EAQKTGQKAL 240 FCQDLNVCST DLTLGTGDSG ITGQDCLGFA KFAKGCGFKP PLSRFDQAKD SCIISEPRKR 300 RKIETASDLK LESSPKSTFL SLASFGFTED SLKENTGLVT NKENGWSPPS RNSSIRYENG 360 QFSCSTPPDL TLSISFSNNS PESIVTNSAM SVKKTPSIIK KRADSFDHSC PRTPAQLNDL 420 NTEIMTAGSE NMKPSTGPWV QRPQPASGRR LDYVFSAEWD PTIVKGCHLS PLTPSSNVNI 480 GTGC

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MKREAQEVGL ASSSSLSDSS YDAITPRSRS MLGNITQTKR SSQAGWTDDE VGWYLCADNL  60
LCEVVRKYNG RNWKKIAERI PGRTDVQCLH RWQKVLNPEI IKGPWTKEED DHIMKLVKAN  120
GCMKWSLIAK DLPGRIGKQC RERWHNHLDP AIKRESWSKE EESTLTYYHR IHGNKWAEIA  180
KHLPGRTDNA IKNHWNCSLK KKLDLNMPPN LPTNIHQTKH KELNNSETRN EAQKTGQKAL  240
FCQDLNVCST DLTLGTGDSG ITGQDCLGFA KFAKGCGFKP PLSRFDQAKD SCIISEPRKR  300
RKIETASDLK LESSPKSTFL SLASFGFTED SLKENTGLVT NKENGWSPPS RNSSIRYENG  360
QFSCSTPPDL TLSISFSNNS PESIVTNSAM SVKKTPSIIK KRADSFDHSC PRTPAQLNDL  420
NTEIMTAGSE NMKPSTGPWV QRPQPASGRR LDYVFSAEWD PTIVKGCHLS PLTPSSNVNI  480
GTGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-75	MYB family protein