PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc015617.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C3H | ||||||||
Protein Properties | Length: 380aa MW: 41946.2 Da PI: 8.5907 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.9e-11 | 14 | 39 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Cse_sc015617.1_g010.1 14 GEPDCSYYIRTGLCRFGATCRFNHPP 39 6899********************97 PP | |||||||
2 | zf-CCCH | 39.1 | 1.3e-12 | 60 | 84 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Cse_sc015617.1_g010.1 60 QPECQYYLKTGTCKFGATCKFHHPR 84 799********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.5e-12 | 107 | 130 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Cse_sc015617.1_g010.1 107 AECAYYLRTGQCKFGSTCKFHHPQ 130 79********************97 PP | |||||||
4 | zf-CCCH | 38.1 | 2.5e-12 | 261 | 287 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Cse_sc015617.1_g010.1 261 PGQPECQFYMKTGDCKFGAVCRFHHPR 287 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.4 | 4.9e-13 | 307 | 333 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Cse_sc015617.1_g010.1 307 PGEPLCIFYSRYGICKFGPSCKFDHPM 333 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence |
MEVMEAGPYP VREGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATAKM RGEYPERAGQ 60 PECQYYLKTG TCKFGATCKF HHPRDKAGIA GRVSLNVLGY PLRTNEAECA YYLRTGQCKF 120 GSTCKFHHPQ PSNMMVSYRG SPAYPTVQSP TSPGQQSYPG GITNWSLSRA SFISPRWQAP 180 SNYAPMILPQ GVVSVPGWSA YGGQLGSISS SESQQQTGGN SQIYGTSRQS DGNNEAIQGT 240 YPSYRTGFYA MPSENVFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERM IPVPDCVLSP 300 MGLPLRPGEP LCIFYSRYGI CKFGPSCKFD HPMGVFAYNF SPSTSADASN VRRLIGSSST 360 NMSPERRQIP TSDDNIDTEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-168 | C3H family protein |