PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc015479.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 1397aa MW: 155692 Da PI: 6.1214

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc015479.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.4e-06	1374	1394	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+++G Ck G++Ck+ H Cse_sc015479.1_g010.1 1374 RVCR-FYESGRCKKGASCKYLH 1394 7899.9999************* PP

Sequence ? help Back to Top
Protein Sequence Length: 1397 aa Download sequence
MEEEIHNHNL VDQIQPINAV VELGNNNKRK GRPPRAAAPM KPKPPPKPVA VKEDDEDVCF 60 ICFDGGSLVL CDHRNCPKAY HPACIKRDEA FFESAARWNC GWHICSICQK TAHHMCYTCT 120 YSLCKGCIKK ADYVCVRDKG FCTICMKTIM LIENNGQGED GKVQADFDDK LSWEYLFKVY 180 WVYLKGKLSL SLNELTEAKN PWKLATPISS ALPPTDVHNR GDNLTSIPAT PVGDLEENES 240 KRRKIDDQIN APHKETVNIE KVGNDENATM VGGAEWATKE LLDFVAHMKN GTTTVLSRSD 300 VQALMMEYIN RNNLRDPKKK NQIICDSRLQ SLFGKPRVGH IQMKKILEYH FFTAKEVSLV 360 KENSRKRIVN RTAVQEDADW TSENKLTVGK DKKRRNRTNG EDRAQHNKLD EFAAVDVHNM 420 NLIYLRRDLM EILLEDSENF HGKVVGSVVR IRISGCDLKH DMYRLVQVVG TSKVDIPYKI 480 NNRSTNVMLE VLNLDKKETI SIDTVSDQEF SQEECRRLQR SIRCGLVKHF TVGEIQDKAM 540 ALQSVKLNDW MEKEIVRLNH LRDIASGKGH KKGYKECVVK LQLLKTPEEW ERRLHAIPAV 600 RSDPKMNPDY ESDDTEEYFN KEDGDHMESK YTVDNSKNSH PSKKRATELN DADTNSRKDE 660 RPTNIEDGST KDAPVSALSK SQHEVNCNDS TITKLDHQTT SSSSVSNTPP NTIASSVPDT 720 APETIASSSP NDMVWHYLDP NGKVQGPFSL VQLQRWSTTG YFPPDMRIWA SHEDEPQLLN 780 DVLKDQLPNY DETLNAANKD VNKIEDLNVC SGVPSSTVTA TPAPNPEKLS QSHGSLGQSF 840 GQNWSANNNL NSSPPTVSLN TTYEADVKQA PTAVVDLPDP APNKMVHEDE RTQSVLDSKV 900 SIQDSGNPPS WSSASSLVDG GVKIPLSGDQ WGGSSSTPVK REEWIDSGLV SVSSFKPPDV 960 VDHVATPTSN IDHNIHMSQP TCNDFTTWHG MTEMIEFSTL AEESVSDLLA EVDAMESQYG 1020 LPSPTSKRNS FVDDLFNGSF DDFCPTPDQG TRSDGFSSSG DIQLPSQSNT TVDEHLVSFD 1080 FMKMSNGSQQ HSFISSEMPT IPQRTNFEEM GFKWPETERI PHEMIDINLS AKADNEEGEM 1140 ETKTIDAQNK EKVEKGNNIQ PTTPLDTSQN HGGPEMNHDR VGGGIVQSLE LTGEMKSATA 1200 LSHAREGTPM QAPKSLGAKL VTRLAQMKGL EGTTNHRKAK EENNVGCIQP EVPQPEQPLP 1260 LPLPPPLTLG LDPFDPSGLE LETTNKSNHS EKPGQGTNTN RSKNIECDPN PSPSPKQRKS 1320 GGERYNSSNS PRTRSHQVED SGYIRNTRSS VNKQSSLGNG SGGYTRPPSK GQQRVCRFYE 1380 SGRCKKGASC KYLHQQP

Sequence ? help Back to Top

Protein Sequence Length: 1397 aa Download sequence

MEEEIHNHNL VDQIQPINAV VELGNNNKRK GRPPRAAAPM KPKPPPKPVA VKEDDEDVCF  60
ICFDGGSLVL CDHRNCPKAY HPACIKRDEA FFESAARWNC GWHICSICQK TAHHMCYTCT  120
YSLCKGCIKK ADYVCVRDKG FCTICMKTIM LIENNGQGED GKVQADFDDK LSWEYLFKVY  180
WVYLKGKLSL SLNELTEAKN PWKLATPISS ALPPTDVHNR GDNLTSIPAT PVGDLEENES  240
KRRKIDDQIN APHKETVNIE KVGNDENATM VGGAEWATKE LLDFVAHMKN GTTTVLSRSD  300
VQALMMEYIN RNNLRDPKKK NQIICDSRLQ SLFGKPRVGH IQMKKILEYH FFTAKEVSLV  360
KENSRKRIVN RTAVQEDADW TSENKLTVGK DKKRRNRTNG EDRAQHNKLD EFAAVDVHNM  420
NLIYLRRDLM EILLEDSENF HGKVVGSVVR IRISGCDLKH DMYRLVQVVG TSKVDIPYKI  480
NNRSTNVMLE VLNLDKKETI SIDTVSDQEF SQEECRRLQR SIRCGLVKHF TVGEIQDKAM  540
ALQSVKLNDW MEKEIVRLNH LRDIASGKGH KKGYKECVVK LQLLKTPEEW ERRLHAIPAV  600
RSDPKMNPDY ESDDTEEYFN KEDGDHMESK YTVDNSKNSH PSKKRATELN DADTNSRKDE  660
RPTNIEDGST KDAPVSALSK SQHEVNCNDS TITKLDHQTT SSSSVSNTPP NTIASSVPDT  720
APETIASSSP NDMVWHYLDP NGKVQGPFSL VQLQRWSTTG YFPPDMRIWA SHEDEPQLLN  780
DVLKDQLPNY DETLNAANKD VNKIEDLNVC SGVPSSTVTA TPAPNPEKLS QSHGSLGQSF  840
GQNWSANNNL NSSPPTVSLN TTYEADVKQA PTAVVDLPDP APNKMVHEDE RTQSVLDSKV  900
SIQDSGNPPS WSSASSLVDG GVKIPLSGDQ WGGSSSTPVK REEWIDSGLV SVSSFKPPDV  960
VDHVATPTSN IDHNIHMSQP TCNDFTTWHG MTEMIEFSTL AEESVSDLLA EVDAMESQYG  1020
LPSPTSKRNS FVDDLFNGSF DDFCPTPDQG TRSDGFSSSG DIQLPSQSNT TVDEHLVSFD  1080
FMKMSNGSQQ HSFISSEMPT IPQRTNFEEM GFKWPETERI PHEMIDINLS AKADNEEGEM  1140
ETKTIDAQNK EKVEKGNNIQ PTTPLDTSQN HGGPEMNHDR VGGGIVQSLE LTGEMKSATA  1200
LSHAREGTPM QAPKSLGAKL VTRLAQMKGL EGTTNHRKAK EENNVGCIQP EVPQPEQPLP  1260
LPLPPPLTLG LDPFDPSGLE LETTNKSNHS EKPGQGTNTN RSKNIECDPN PSPSPKQRKS  1320
GGERYNSSNS PRTRSHQVED SGYIRNTRSS VNKQSSLGNG SGGYTRPPSK GQQRVCRFYE  1380
SGRCKKGASC KYLHQQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein