PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc015366.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 723aa MW: 84967.3 Da PI: 8.7886

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc015366.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.1	8.8e-11	26	108	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 A+++GF ++k+++k+ g ++ +++Cs++g++++e + ++ +r++++ +t+C kl vk k ++ w + l HnH+++ Cse_sc015366.1_g040.1 26 AQSIGFLIVKASTKTD--RGYKYSIEYKCSRHGTSAREGLE-DELQRQTSTAKTNCPIKLLVKYIKgeTNGWILRVKCLRHNHDFV 108 899*****998887..6667***********9999.888999999*********99878889999899***986 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MSETRGGVGW VFPDDDVLTN WVQSIAQSIG FLIVKASTKT DRGYKYSIEY KCSRHGTSAR 60 EGLEDELQRQ TSTAKTNCPI KLLVKYIKGE TNGWILRVKC LRHNHDFVDS FHGFPHAKRL 120 KDHELVLVEQ FTKHKVAPRI ILSSLKESDP DNMSNIKTIY NAQNKIRGAI RGDRTQIQVL 180 LAHLSRQGYT YYPRVNDRAN ELEEIFFVHS TAYALWTTFP EIMLMDSTYN TTLFKLPFFT 240 IVGVTSTNKT FSMAFSFLNC EKEPNFRWVL ECVKRVIEEQ YYPRVIVTDR DLALLRACRA 300 EFPNANKLLC QWHINQNVLK NCRHRFDTEE EYTSVRWSWD WMVKALTKDM FMHYYQHLQE 360 LLVQKQDVLW YFNNWLQHYD HMFVSYITDP YRSFGQTTTC RVESQHVLLK LYLGSTQSNL 420 DTLLSSVDKI LVAQETAIRD SFNTSITKKL HVCRDTLFDE LRCGYFVDEL RYKVSKHALL 480 LIIVESKLDM DPLECRHQLR LLCELPCYHE LVYYQIHGWH IPLNVVDNFW RTLSAPWPRA 540 LPTHTPEDPE VVLSCQADVE KFQNVFSKAS SFVKKNMLNM MRGIYAPESV STREPAINES 600 TRGRPSAKDK KSKAKKIPDL NKEPTTRHRK SYSKPKKVPD LNEEPARHML FRRYILKILN 660 VEDDGNCGYR AIGVGLGYTE DIWRNLRTLV REEVNNNREL YREMWGTWFE QISHSDVLRV 720 YRF

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MSETRGGVGW VFPDDDVLTN WVQSIAQSIG FLIVKASTKT DRGYKYSIEY KCSRHGTSAR  60
EGLEDELQRQ TSTAKTNCPI KLLVKYIKGE TNGWILRVKC LRHNHDFVDS FHGFPHAKRL  120
KDHELVLVEQ FTKHKVAPRI ILSSLKESDP DNMSNIKTIY NAQNKIRGAI RGDRTQIQVL  180
LAHLSRQGYT YYPRVNDRAN ELEEIFFVHS TAYALWTTFP EIMLMDSTYN TTLFKLPFFT  240
IVGVTSTNKT FSMAFSFLNC EKEPNFRWVL ECVKRVIEEQ YYPRVIVTDR DLALLRACRA  300
EFPNANKLLC QWHINQNVLK NCRHRFDTEE EYTSVRWSWD WMVKALTKDM FMHYYQHLQE  360
LLVQKQDVLW YFNNWLQHYD HMFVSYITDP YRSFGQTTTC RVESQHVLLK LYLGSTQSNL  420
DTLLSSVDKI LVAQETAIRD SFNTSITKKL HVCRDTLFDE LRCGYFVDEL RYKVSKHALL  480
LIIVESKLDM DPLECRHQLR LLCELPCYHE LVYYQIHGWH IPLNVVDNFW RTLSAPWPRA  540
LPTHTPEDPE VVLSCQADVE KFQNVFSKAS SFVKKNMLNM MRGIYAPESV STREPAINES  600
TRGRPSAKDK KSKAKKIPDL NKEPTTRHRK SYSKPKKVPD LNEEPARHML FRRYILKILN  660
VEDDGNCGYR AIGVGLGYTE DIWRNLRTLV REEVNNNREL YREMWGTWFE QISHSDVLRV  720
YRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-17	FAR1 family protein