PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc015261.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 489aa MW: 54236.2 Da PI: 9.8284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc015261.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F+r nL+ H r H Cse_sc015261.1_g010.1 64 FVCEVCFKGFPREQNLQLHKRGH 86 89******************988 PP
2	zf-C2H2	11.4	0.001	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C k++ s+Lk H++t+ Cse_sc015261.1_g010.1 141 YKCKKCMKMYAVDSDLKAHLKTC 163 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MKRLKEMASR SRMLFFVKRE EEDQMNQTQL PGVPPKKRRN HPDADADAEV IALSPTTLTA 60 KNRFVCEVCF KGFPREQNLQ LHKRGHNLPW QLKQKSLKDE VKRKVYLCPV PSCVHHDPSN 120 ALGDLTGIKK HYSRKHGEKK YKCKKCMKMY AVDSDLKAHL KTCSTKEYQC HCGTFFSRRD 180 RFISHRAFCE ALGQIKYSQT LSAMGSSSKS NTNRNIPSLS VPLIHSCSQI SLIQNLTSNS 240 PEITHGESWL NKKSLNSLMN RPSIDINCYK PSQAFVTVPS QQENKHKNHG NINTKFFTNL 300 LTNTTTPCNK NNFNLAGNVK NYENGEGPSL FCSGGSVSDH SGPIYLSTSH TAVMPQLSAT 360 ALLQKAGMIG STSSNTIATN FSRGYASSSL RGPIGGTTFE RAKFPVGSKS YDNMDELLNS 420 FSSNGNRSSI FTQYAGATYE QEASYQDQSQ NLGSKISFQQ SRGVTFTRDF LGVGGEIVGD 480 LSSDGPQSG

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MKRLKEMASR SRMLFFVKRE EEDQMNQTQL PGVPPKKRRN HPDADADAEV IALSPTTLTA  60
KNRFVCEVCF KGFPREQNLQ LHKRGHNLPW QLKQKSLKDE VKRKVYLCPV PSCVHHDPSN  120
ALGDLTGIKK HYSRKHGEKK YKCKKCMKMY AVDSDLKAHL KTCSTKEYQC HCGTFFSRRD  180
RFISHRAFCE ALGQIKYSQT LSAMGSSSKS NTNRNIPSLS VPLIHSCSQI SLIQNLTSNS  240
PEITHGESWL NKKSLNSLMN RPSIDINCYK PSQAFVTVPS QQENKHKNHG NINTKFFTNL  300
LTNTTTPCNK NNFNLAGNVK NYENGEGPSL FCSGGSVSDH SGPIYLSTSH TAVMPQLSAT  360
ALLQKAGMIG STSSNTIATN FSRGYASSSL RGPIGGTTFE RAKFPVGSKS YDNMDELLNS  420
FSSNGNRSSI FTQYAGATYE QEASYQDQSQ NLGSKISFQQ SRGVTFTRDF LGVGGEIVGD  480
LSSDGPQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	7e-78	C2H2 family protein