PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc015222.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 18105 Da PI: 9.4639 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.5 | 2.7e-11 | 6 | 47 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 n+s r+ + +R +g+ KK +ELS+LC++e++ i++ +++ Cse_sc015222.1_g020.1 6 MTNDSARKSCYKRRMQGMKKKLSELSILCGIEACAIVYRPNN 47 6799*********************************98876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
MKLAFMTNDS ARKSCYKRRM QGMKKKLSEL SILCGIEACA IVYRPNNPQA EVWPNSTGVY 60 NVLAQFLRTP EINRFRNMVT QEGYIRERVN KADRELKKQI KKNQKQEMTE MMYQCLIGDT 120 PLDSLCMKNL NDLGSLVDQT LSEIDSRIES LKKADTA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-45 | M-type_MADS family protein |