PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014582.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 1867aa MW: 206603 Da PI: 8.075

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014582.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.5	9.6e-23	1773	1864	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkle 82 fY++YA+ GFsvrk + + +ge ++r+fvC++eg++e++ +++k++r++ ++r++C+a++++k++k + w+vtk++ Cse_sc014582.1_g010.1 1773 FYKNYATIKGFSVRKGRFDND--KGERIRRDFVCNREGSSETKVIDSSKQQRNSRSKRCECNAHMRIKLRKineslPEMWRVTKFV 1856 9*************98887..7888***************9******************9985555578*** PP FAR1 83 leHnHela 90 eHnH l+ Cse_sc014582.1_g010.1 1857 AEHNHVLF 1864 ***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1867 aa Download sequence
MQCDGKLGFG FELWEYIADF DFCTRNDYSE IAENVALEGV WDVAYLVMSA KMVKDNRRSN 60 KAKANENIKS KEKAVYISSG GSMKKIVKQD ASPASNSRRS SRDLAADKKV KGNENITPKK 120 KTITPNASPA SSSRRSSTSS RKQTKESPGK DNPTNMRKSV RLQNLNPSDT PQSKDKSKKT 180 QEENKKTPVS DRRNKLVEES PSSNSKSNKK KAVKSLDQCM TDTSENKGQE KPSLGAGGRK 240 RKKGRKKFFS KVKQKRAVAD GDKAKDSEES LSEASSSSEL VTELEKPDKL HQVDNNDKES 300 EEKSSEANSS SSSDVAMEDK LHQLDSNNTE YSVSKSVEDK DDNDDECSDR KASKSQCREE 360 ENNVKELLDD YLMDLDKATH VGSLRKSVDG ESIGRGSGEG SSSESEKSPK KQKYQTNHAL 420 GKQHELKYCD TPNSEVGQLT DDRTTCEAAG LAEIVEESKG VKNMKSSVSL VSGVAESNSS 480 KFVEFRVPVQ ISNVQLEQYC SMLLSNAMAL SSCSKTDTVG AVHDILVSNR KCCDHPYIAD 540 QSLQEILTQG LELAKFLDVG IKASGKLQFL DLILPELRKR KLRVLILYQP LSGSGKGSAS 600 IGDILDDFLR QRFGEDSYER IDGVGIVPSK KQAALNNFNN KDMGRFVFLL EYRACLPSIK 660 LSSVDTVIVF NSDWNPANDL RALNRIAIDS QSEQIMIFRL YTSSTLEEKI LRLAEHNVTI 720 DSKLQNISRS TSDALLMWGA TYLFKKLDEF HNASGVNTCS EECLLDELSE EFINLITHVR 780 MNKDATKLMI TRAQPVCEIY GKNPTVPNKT GGEQPHTFWR KLLVGRDPCW KYLAMSNPRQ 840 RKSKRPQYSE QSPEKITNDD VARKRKKTTN NITESVSSKP VTEEGEVVGA NKSQSSAGDS 900 FWSDIPETSL HDFLKLKISR LCELLGLSEE VKTTVERFLE YVIENYHVNN EHANTLQAFL 960 ISLCWSGSEM LKHKLDRTQS IAIANEHLNF SCDEEETHNI YLKLESAKEM FIRHTKNQKK 1020 TYVSEDSIPE IEPTSMQPLD VKEEIPDSPP SQYNDNVVDC NPIYAEIGTI NPDTSDAPEN 1080 QNDFHILNNS DSPSAGVSKE NTPSVPRVVS PASGQSVPTD PEIQKETTLE NEVQVNSTSF 1140 AETSCLQTIG AGKVDQLQPE GSSLQLGMGQ CSPSVASPQV AEIHSTTSTV EQRSDSYSAD 1200 KVDCQPSNKP PSPSQSLSAS SQVLETSARV PNPAVTPRGS NLLNVKRFDN RNKGVSRPYS 1260 DPLQNEMEKL CELKNNILKF HEVVKLKLKS DHEKELAEVI AEMNRKYEAK CQEAEAAFQS 1320 KRVEIDTSFN KVVKNKILAD VFRSKCQDMS PFDPAVLRVQ SRAVQFQGQP SMGRSTSLSP 1380 AQVSRIPQQP PLQIVHQSAN LFSSTPTRPP SNTIQSSIPI RPPQSTSTPS TTPTRPPPIN 1440 PITPSSRPPS TTGPINTPSR PPSGVSPMTP SIRLNIPPLN INPITPSNRP PPNINPITPS 1500 SRPPPDINPI TPSSRPPPSN NPTAPFARNP RAISEVRAPA PHIRPFTPST TASPHNLSSH 1560 RMISSHHASS PTSQSSTPPP HFSPLQTPPH LQTNHNGHPT QNSPRMQPFS SLLAAQTSSQ 1620 SLAASLALPP LYSWHPSEQH PQGSLPAMSS SLPQTSLPPM PPISMSNTGL YSAPGGSLNL 1680 SQSALDLLMD IDKKAKLHQQ PSTLPSQPEF SDVTEFGKKS GSSDPMEERV PFDLEKVTLE 1740 QYSIIGQGTK KGLGTNEPFV GQCFLSEEEA LVFYKNYATI KGFSVRKGRF DNDKGERIRR 1800 DFVCNREGSS ETKVIDSSKQ QRNSRSKRCE CNAHMRIKLR KINESLPEMW RVTKFVAEHN 1860 HVLFSLK

Sequence ? help Back to Top

Protein Sequence Length: 1867 aa Download sequence

MQCDGKLGFG FELWEYIADF DFCTRNDYSE IAENVALEGV WDVAYLVMSA KMVKDNRRSN  60
KAKANENIKS KEKAVYISSG GSMKKIVKQD ASPASNSRRS SRDLAADKKV KGNENITPKK  120
KTITPNASPA SSSRRSSTSS RKQTKESPGK DNPTNMRKSV RLQNLNPSDT PQSKDKSKKT  180
QEENKKTPVS DRRNKLVEES PSSNSKSNKK KAVKSLDQCM TDTSENKGQE KPSLGAGGRK  240
RKKGRKKFFS KVKQKRAVAD GDKAKDSEES LSEASSSSEL VTELEKPDKL HQVDNNDKES  300
EEKSSEANSS SSSDVAMEDK LHQLDSNNTE YSVSKSVEDK DDNDDECSDR KASKSQCREE  360
ENNVKELLDD YLMDLDKATH VGSLRKSVDG ESIGRGSGEG SSSESEKSPK KQKYQTNHAL  420
GKQHELKYCD TPNSEVGQLT DDRTTCEAAG LAEIVEESKG VKNMKSSVSL VSGVAESNSS  480
KFVEFRVPVQ ISNVQLEQYC SMLLSNAMAL SSCSKTDTVG AVHDILVSNR KCCDHPYIAD  540
QSLQEILTQG LELAKFLDVG IKASGKLQFL DLILPELRKR KLRVLILYQP LSGSGKGSAS  600
IGDILDDFLR QRFGEDSYER IDGVGIVPSK KQAALNNFNN KDMGRFVFLL EYRACLPSIK  660
LSSVDTVIVF NSDWNPANDL RALNRIAIDS QSEQIMIFRL YTSSTLEEKI LRLAEHNVTI  720
DSKLQNISRS TSDALLMWGA TYLFKKLDEF HNASGVNTCS EECLLDELSE EFINLITHVR  780
MNKDATKLMI TRAQPVCEIY GKNPTVPNKT GGEQPHTFWR KLLVGRDPCW KYLAMSNPRQ  840
RKSKRPQYSE QSPEKITNDD VARKRKKTTN NITESVSSKP VTEEGEVVGA NKSQSSAGDS  900
FWSDIPETSL HDFLKLKISR LCELLGLSEE VKTTVERFLE YVIENYHVNN EHANTLQAFL  960
ISLCWSGSEM LKHKLDRTQS IAIANEHLNF SCDEEETHNI YLKLESAKEM FIRHTKNQKK  1020
TYVSEDSIPE IEPTSMQPLD VKEEIPDSPP SQYNDNVVDC NPIYAEIGTI NPDTSDAPEN  1080
QNDFHILNNS DSPSAGVSKE NTPSVPRVVS PASGQSVPTD PEIQKETTLE NEVQVNSTSF  1140
AETSCLQTIG AGKVDQLQPE GSSLQLGMGQ CSPSVASPQV AEIHSTTSTV EQRSDSYSAD  1200
KVDCQPSNKP PSPSQSLSAS SQVLETSARV PNPAVTPRGS NLLNVKRFDN RNKGVSRPYS  1260
DPLQNEMEKL CELKNNILKF HEVVKLKLKS DHEKELAEVI AEMNRKYEAK CQEAEAAFQS  1320
KRVEIDTSFN KVVKNKILAD VFRSKCQDMS PFDPAVLRVQ SRAVQFQGQP SMGRSTSLSP  1380
AQVSRIPQQP PLQIVHQSAN LFSSTPTRPP SNTIQSSIPI RPPQSTSTPS TTPTRPPPIN  1440
PITPSSRPPS TTGPINTPSR PPSGVSPMTP SIRLNIPPLN INPITPSNRP PPNINPITPS  1500
SRPPPDINPI TPSSRPPPSN NPTAPFARNP RAISEVRAPA PHIRPFTPST TASPHNLSSH  1560
RMISSHHASS PTSQSSTPPP HFSPLQTPPH LQTNHNGHPT QNSPRMQPFS SLLAAQTSSQ  1620
SLAASLALPP LYSWHPSEQH PQGSLPAMSS SLPQTSLPPM PPISMSNTGL YSAPGGSLNL  1680
SQSALDLLMD IDKKAKLHQQ PSTLPSQPEF SDVTEFGKKS GSSDPMEERV PFDLEKVTLE  1740
QYSIIGQGTK KGLGTNEPFV GQCFLSEEEA LVFYKNYATI KGFSVRKGRF DNDKGERIRR  1800
DFVCNREGSS ETKVIDSSKQ QRNSRSKRCE CNAHMRIKLR KINESLPEMW RVTKFVAEHN  1860
HVLFSLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	244	GRKRKKG
2	239	243	RKRKK
3	239	265	RKRKKGRKKFFSKVKQKRAVADGDKAK
4	577	582	LRKRKL
5	863	867	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	6e-14	FAR1 family protein