PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013884.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 620aa MW: 71702.8 Da PI: 9.0363

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013884.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.9	1.4e-07	87	133	46	91
FAR1 46 kktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++++++++ ++ tgC a++k+ ++ +gk+++ k++ HnH+l+p Cse_sc013884.1_g060.1 87 DDENETHNGKNLRVTGCMARVKLDLDPvSGKYKLVKFNPRHNHTLCP 133 23356778888999*******************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MDNIGENTCV QVFEGSVGSV CDVGSEVMSG DDVEGVRIVE EGNDVMSIDD VEGVRIVEEG 60 LLAMNDAGDA ERVRFIVEDD IRSGETDDEN ETHNGKNLRV TGCMARVKLD LDPVSGKYKL 120 VKFNPRHNHT LCPEVYRHLF KTERKMVYSE KLFVMKAKTA NIGATVAHHI YSSMKGYDLV 180 HGKVMDFKNY FRELNCFIGE GDSQMLINKM ENRKAYNMIC KKIYDETDFK RRFNEIVWDM 240 FLEPRGFEEK WGKLIEDFGL KDHKWMMKMF NMRSAWIPAY FLDSPLFGLM RTTSRSDSEN 300 SFFSHFTNEG STLINFMTCF ESAMEKQRHI QEQLDFDSMD SMPKLKTKLM IEKHAALVYT 360 RTIFLRVQTE INEGIWDCQI QNVQTRDGCE ITLIRDKNAG EYRTLYKEKK KGKSEANAGE 420 YRTLYKEKKK GKSEAVEKPK VARVQAIYKV LRNLEDGSVV CTCRHFLRFG FLCRHIFCVF 480 KNNDIEKIPE KYILRRWTRD IIPPDLRRKR NRYGEKNETI DRLTNEXKID VNNPSGAKNK 540 GGTREVRRKS EREKAIDASL KPKRKCGEFG VKTNTHTKKT CPLGPKAIAA AKAAAEKAAA 600 EKSMNNTAXL LYKYFTYFKF

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MDNIGENTCV QVFEGSVGSV CDVGSEVMSG DDVEGVRIVE EGNDVMSIDD VEGVRIVEEG  60
LLAMNDAGDA ERVRFIVEDD IRSGETDDEN ETHNGKNLRV TGCMARVKLD LDPVSGKYKL  120
VKFNPRHNHT LCPEVYRHLF KTERKMVYSE KLFVMKAKTA NIGATVAHHI YSSMKGYDLV  180
HGKVMDFKNY FRELNCFIGE GDSQMLINKM ENRKAYNMIC KKIYDETDFK RRFNEIVWDM  240
FLEPRGFEEK WGKLIEDFGL KDHKWMMKMF NMRSAWIPAY FLDSPLFGLM RTTSRSDSEN  300
SFFSHFTNEG STLINFMTCF ESAMEKQRHI QEQLDFDSMD SMPKLKTKLM IEKHAALVYT  360
RTIFLRVQTE INEGIWDCQI QNVQTRDGCE ITLIRDKNAG EYRTLYKEKK KGKSEANAGE  420
YRTLYKEKKK GKSEAVEKPK VARVQAIYKV LRNLEDGSVV CTCRHFLRFG FLCRHIFCVF  480
KNNDIEKIPE KYILRRWTRD IIPPDLRRKR NRYGEKNETI DRLTNEXKID VNNPSGAKNK  540
GGTREVRRKS EREKAIDASL KPKRKCGEFG VKTNTHTKKT CPLGPKAIAA AKAAAEKAAA  600
EKSMNNTAXL LYKYFTYFKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-30	FAR1 family protein